利用本实验室分离保存的猪源副黏病毒JL-1株来提取病毒基因组RNA。参考GenBank发表的相关禽副粘病毒Ⅰ型(Avian paramyxovirus serotype1,APMV-1)基因组序列,设计了8对特异性引物,RT—PCR法分别特异性的扩增出病毒各基因片段,并将各目的基因片段回收纯化,将纯化后的PCR产物进行测序。测定结果得到NP、P、M、F、HN、La、Lb、Lc8段基因序列,利用DNAMAN软件进行拼接得到基因组全长cDNA序列(GenBank登录号:EU546165)。序列分析结果表明,PPMV JL—1株与各地代表株核苷酸同源性87.85%~99.78%,与鹅源新城疫(GPMV)ZJ-1、NA-1株核苷酸同源性分别为83.31%、83.46%,同时根据各毒株F基因开放阅读框前389个核苷酸序列绘制出系统发育进化树,结果表明PPMV JL-1株与LaSota同属于基因Ⅱ型,不同于基因Ⅶ型的ZJ-1和NA-1株的鹅源毒株。
Porcine paramyxovirus(PPMV)strain JL-1 was separated and conserved by this laboratory. Using the DNAMAN,eight pairs of over lapping primers, which cover the whole genome of avian paramyxovirus serotype 1 (APMV-1) strain,were designed according to the nucleotide sequence reported. Eight over-lapping fragments were amplified by the RT-PCR. The complete genome after sequencing and splicing was logged in the GenBank(Number: EU546165). Sequence analysis results indicated that the homology of complete genome nucleotide sequence from NDV strains was between 87. 85% and 99. 78% by compared with representative strains from every local. Meanwhile,on the basis of the nucleotide sequence of F gene from each NDV strains in a 389 bp region, the phylogenetic tree was drew,that indicated porcine paramyxovirus virulent strain JL-1 belonged to genotype Ⅱ which was the same with virulent strain Lassota, but different from the traditional low virulent strain Lassota which belonged to genotype Ⅱ ,and goose paramyxovirus strains ZJ-1 and NA-1 ,which belonged to genotype Ⅶ.