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玉米大斑病菌MAPK基因St IME2的基因组定位、蛋白质结构预测及表达分析
  • ISSN号:0578-1752
  • 期刊名称:《中国农业科学》
  • 时间:0
  • 分类:S435.131.4[农业科学—农业昆虫与害虫防治;农业科学—植物保护]
  • 作者机构:[1]河北农业大学真菌毒素与植物分子病理学实验室,中国河北保定071001, [2]唐山师范学院生命科学系,中国河北唐山063000, [3]伊利诺伊大学香槟分校食品科学与人类营养系,厄本纳61801,USA
  • 相关基金:国家自然科学基金(31171805,31271997,31371897); 河北省自然科学基金(C2012204033,C2013204061); 河北省高等学校科学技术研究项目(ZD20131009)
中文摘要:

【目的】确定玉米大斑病菌(Setosphaeria turcica)MAPK基因St IME2在基因组中的位置;系统解析目的蛋白质St Ime2的结构特征;分析玉米大斑病菌St IME2在不同发育时期及不同胁迫条件下(温度、氧胁迫、高渗胁迫)的表达,为深入研究该基因的功能奠定基础。【方法】通过本地Blast搜索玉米大斑病菌基因组数据库,确定St IME2在基因组的精确位置;利用Prot Param在线分析St Ime2蛋白的理化性质,利用SOMPA在线软件预测St Ime2蛋白的二级结构。通过PHYRE2在线服务器对St Ime2蛋白的三维结构进行预测。利用半定量RT-PCR方法分析不同发育时期及不同胁迫条件下St IME2的表达。【结果】玉米大斑病菌St IME2为一类与酿酒酵母中Sc IME2具有较高同源性的基因,为在植物病原真菌中鲜有报道的MAPK基因。该基因的ID为98 105,位于scaffold_7正链的1 560 184—1 562 574位置,St Ime2蛋白具有MAPK类蛋白激酶的特征性保守结构域,其二级结构主要以α-螺旋和无规则卷曲为主,β-折叠较少且主要存在于N端,其三级结构具有1个较小的N端域和1个较大的C端域;该基因在病菌分生孢子时期表达量最高,附着胞发育时期表达量最低。将病菌置于不同温度条件下处理,发现培养温度为28℃时St IME2表达量达到最高。在高渗胁迫条件下,随Na Cl浓度的增加,St IME2的表达量逐渐增加,但在较高胁迫条件下(0.8 mol·L-1 Na Cl),该基因表达几乎被完全抑制。经H2O2胁迫处理后,St IME2的表达量随H2O2的浓度增加而增强,在10 mmol·L-1 H2O2的处理下表达量最高。【结论】玉米大斑病菌St IME2位于scaffold_7正链的1 560 184—1 562 574位置。St Ime2蛋白具有MAPK激酶的所有特征性保守结构域,为一类功能鲜有报道的MAPK蛋白激酶。该基因在玉米大斑病菌分生孢子时期表达量最高,推测可能在调控病菌分生孢子发育过程中起重要作用。该基因的表达水平可随培

英文摘要:

【Objective】The objectives of this study are to determine the location in genome, investigate the protein structure of St IME2 of Setosphaeria turcica, and to compare the expression level of St IME2 at different developmental stages and under different stress conditions, such as temperature, oxygen stress, hyperosmolar stress, hence laying a foundation for future studying functions of St IME2.【Method】 Blast search tool was used to determine the exact location of St IME2 in genome of S. turcica. Physical and chemical properties of St Ime2 was analyzed by employing online software Prot Param, and secondary structure of St Ime2 was predicted by applying Software SOMPA. Three-dimensional structure of St Ime2 was doped out using PHYRE2 server and the structure model was evaluated using online software SAVES and the aim was to obtain Laplace image(Ramachandran Plot). St IME2 expression level was detected at different developmental stages and stress conditions based on semi-quantitative RT-PCR analysis. 【Result】The identity of St IME2 was 98 105, located between 1 560 184 and 1 562 574 in the positive-strand of scaffold_7 in the genome of S. turcica. St Ime2 shared characteristic conserved domains of MAPK-like protein kinase, α-helices and random coils, which were its main elements of secondary structure of St Ime2. β strands were less and mainly located in N-terminal in this structure. Three-dimensional structure of the protein was composed of a smaller N-terminal and a bigger C-terminal. The expression level of St IME2 was the highest in conidium developmental periods, and was the lowest during appressorium development stage. Under different stress conditions, the expression level of St IME2 appeared the highest when the incubation temperature was at 28℃. In hyperosmotic stress conditions, the expression level of St IME2 increased with the increase of Na Cl concentration, but the expression level of the gene was almost completely inhibited at higher stress conditions(0.8 mol·L-1 Na Cl). Under o

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期刊信息
  • 《中国农业科学》
  • 中国科技核心期刊
  • 主管单位:中华人民共和国农业部
  • 主办单位:中国农业科学院 中国农学会
  • 主编:万建民
  • 地址:北京中关村南大街12号中国农业科学院图书馆楼4101-4103室
  • 邮编:100081
  • 邮箱:zgnykx@caas.cn
  • 电话:010-82109808 82106279
  • 国际标准刊号:ISSN:0578-1752
  • 国内统一刊号:ISSN:11-1328/S
  • 邮发代号:2-138
  • 获奖情况:
  • 中国期刊方阵“双高”期刊,第三届中国出版政府奖提名奖
  • 国内外数据库收录:
  • 美国化学文摘(网络版),英国农业与生物科学研究中心文摘,波兰哥白尼索引,英国动物学记录,日本日本科学技术振兴机构数据库,中国中国科技核心期刊,中国北大核心期刊(2004版),中国北大核心期刊(2008版),中国北大核心期刊(2011版),中国北大核心期刊(2014版),英国食品科技文摘,中国北大核心期刊(2000版)
  • 被引量:85620