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基于ITS序列鉴别3种感染白牦牛线虫的PCR—RFLP方法的建立
  • ISSN号:1000-7423
  • 期刊名称:《中国寄生虫学与寄生虫病杂志》
  • 时间:0
  • 分类:R383.19[医药卫生—医学寄生虫学;医药卫生—基础医学]
  • 作者机构:[1]甘肃农业大学动物医学院,兰州730070, [2]中国农业科学院兰州兽医研究所,兰州730046, [3]家畜疫病病原生物学国家重点实验室,兰州730046, [4]甘肃省动物寄生虫病重点实验室,兰州730046
  • 相关基金:国家自然科学基金(No.31460659);国家公益性行业(农业)科研专项经费(No.201303037);甘肃省国际科技合作专项(No.144WCGA169)
中文摘要:

目的 基于内转录间隔区(ITS)序列, 建立鉴别3种感染白牦牛线虫的PCR-限制性片段长度多态性(PCR-RFLP)方法。方法 将从甘肃省天祝藏族自治县1头白牦牛小肠中分离的12条线虫进行消化并提取DNA, PCR扩增ITS序列并送测序, 测序结果在GenBank数据库进行同源性分析。用DNAstar7.1软件分析序列之间的差异, 用邻接(NJ)法构建系统进化树。根据序列选择特异的酶切位点, 对PCR产物分别进行酶切反应, 建立PCR-RFLP方法。结果 12条线虫均扩增出长度约900 bp的ITS序列片段, 与预期结果一致。测序结果同源性分析显示, 其中3种各4条分别与已报道的肿孔古柏线虫(Cooperia oncophora, GenBank登录号为AB534601)、环纹背带线虫(Teladorsagia circumcincta, GenBank登录号为JF680984)、奥斯特线虫(Ostertagia sp., GenBank登录号为HQ844228)的序列相似性高于99%。ITS序列比较发现, 3种线虫种间差异为4.3%~13.9%, 种内差异均低于1%。其中肿孔古柏线虫与奥斯特线虫的ITS序列差异最大, 为13.6%~13.9%; 肿孔古柏线虫与环纹背带线虫ITS序列差异为12.9%~13.1%; 环纹背带线虫和奥斯特线虫ITS序列的差异最小, 为4.3%~4.8%。系统进化树结果显示, 3种线虫被分为明显的3支, 且环纹背带线虫和奥斯特线虫有更近的亲缘性。ITS序列酶切结果显示, NdeⅠ酶可将环背带线虫和肿孔古柏线虫的ITS序列酶切成约650 bp和250 bp的片段, EcoR Ⅴ酶仅将肿孔古柏线虫酶切成约700 bp和200 bp的片段, 2种内切酶均不能酶切奥斯特线虫的ITS序列。 结论 建立的基于ITS序列的PCR-RFLP方法可鉴别感染白牦牛的肿孔古柏线虫、环纹背带线虫、奥斯特线虫。

英文摘要:

Objective To develop the polymerase chain reaction (PCR)-restriction fragment length polymorphism (RFLP) method based on internal transcribed spacers (ITS) of ribosomal DNA to identity three nematode species that infected a white yak. Methods Twelve nematodes were collected from the small intestine of a white yak in Tianzhu Tibetan Autonomous County, Gansu Province, and DNA was extracted. Then the ITS region was amplified by PCR and sequenced. The sequences were analysed by DNAstar7.1 software and the phylogenetic tree was constructed by the neighbor-joining (NJ) method. Specific sites for restriction endonucleases were identified, based on which the PCR products were digested, and the PCR-RFLP method was established. Results PCR resulted in specific ITS bands of 900 bp for all the 12 nematodes. Sequencing results showed that each was approximately 900 bp in length. The sequences of 4 of the 12 nematodes had sequence similarity of 〉 99% with Cooperia oncophora (GenBank accession number AB534601), Teladorsagia circumcincta (GenBank accession number JF680984), and Ostertagia sp. (GenBank accession number HQ844228). However, the interspecies difference in ITS sequence among the three species was 4.3%-13.9%, while the intraspecific difference was 〈 1%. The interspecies difference in ITS sequence was most significant between C. Oncophora and T. circumcincta (12.9%-13.1%), medium between C. oncophora and Ostertagia sp. (13.6%-13.9%), and the least between T. circumcincta and Ostertagia sp. (4.3%-4.8%). The phylogenetic tree grouped the three nematode species into three branches, and revealed a closer ralationship between T. circumcincta and Ostertagia sp. PCR-RFLP analyses showed that the ITS sequences of C. Oncophora and T. circumcinctais were cut into fragments of 650 bp and 250 bp with endonuclease NdeⅠ, while only the ITS sequence of C. oncophora was cut into fragments of 700 bp and 200 bp with EcoR Ⅴ. The two endonucleases were ineffective for the ITS sequences of Os

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期刊信息
  • 《中国寄生虫学与寄生虫病杂志》
  • 中国科技核心期刊
  • 主管单位:中华人民共和国国家卫生和计划生育委员会
  • 主办单位:中华预防医学会 中国疾病预防控制中心寄生虫病预防控制所
  • 主编:汤林华
  • 地址:上海市瑞金二路207号右楼3F
  • 邮编:200025
  • 邮箱:zgjsczz@vip.163.net
  • 电话:021-54562376
  • 国际标准刊号:ISSN:1000-7423
  • 国内统一刊号:ISSN:31-1248/R
  • 邮发代号:4-362
  • 获奖情况:
  • 1997年被中华预防医学会评为先进编辑部,2000年荣获中华预防医学会系列杂志优秀期刊一等奖,2001年荣获中华预防医学会2001年优秀期刊二等奖,2003年荣获2001-2002年中华预防医学会系列杂志优...,2009年获“百种中国杰出学术期刊”奖,2010年荣获上海市科技期刊审计优秀奖,2011年遴选为第二届“中国精品科技期刊”,获第三届“RCCSE中国权威学术期刊”,2013年荣获国家卫生计生委首届优秀期刊,2013年荣获第四届华东地区优秀期刊奖
  • 国内外数据库收录:
  • 美国化学文摘(网络版),英国农业与生物科学研究中心文摘,荷兰文摘与引文数据库,美国生物医学检索系统,英国动物学记录,日本日本科学技术振兴机构数据库,中国中国科技核心期刊,中国北大核心期刊(2004版),中国北大核心期刊(2008版),中国北大核心期刊(2011版),中国北大核心期刊(2014版),中国北大核心期刊(2000版)
  • 被引量:11792