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结合分子模拟探讨共聚酯PBSH在不同溶剂中的PC脂肪酶催化降解
  • ISSN号:1000-3304
  • 期刊名称:《高分子学报》
  • 时间:0
  • 分类:O643.36[理学—物理化学;理学—化学]
  • 作者机构:[1]陕西科技大学教育部轻化工助剂化学与技术重点实验室,西安710021, [2]日本秋田县立大学日本秋田015-0055
  • 相关基金:高等学校博士学科点专项科研基金(基金号20126125110001)资助项目
中文摘要:

采用固定化洋葱假单胞菌(PC)脂肪酶为催化剂,研究了在氯仿和四氢呋喃(THF)中不同摩尔比的聚(丁二酸丁二醇-co-丁二酸己二醇酯)(PBSH)的酶促降解规律及其差异性.通过PBSH降解前后的相对分子质量变化、降解产物的MALDI-TOF-MS分析研究了共聚酯降解规律,并以分子动力学(MD)及分子对接模拟分别研究了PC酶的溶剂效应及酶与底物的结合机制.研究结果表明,PC酶在2种溶剂中均可催化PBSH降解,但在氯仿中酶的活性较大,PBSH降解率大.分子动力学模拟数据表明,在THF中,PC酶整体氨基酸残基的涨落比氯仿中大,且THF会进入酶活性口袋中与催化残基Ser87结合,破坏了催化残基Ser87和His286之间的相互作用.分子对接结果分析发现,含丁二酸己二醇酯(HS)单元底物与PC酶活性位点的对接比含丁二酸丁二醇酯(BS)单元的更为稳定.

英文摘要:

The bio-catalysed cleavage of ester bonds in poly (butylene succinate-co-hexane succinate) (PBSH) was studied with the aim to gain more underlying information about the degradation rules and differences in chloroform and tetrahydrofuran. Among various hydrolytic enzymes the lipase from Pseudomonas cepacia (PC) was chosen for the studies. The rules of enzymatic degradation were investigated by molecular weight variation and MALDI-TOF-MS analysis of the degradation products. Additionally, solvent effect and mechanism of the combination between substrate and enzyme were studied with molecular dynamics (MD) simulations and molecular docking. The results suggested that PBSH showed an obvious degradation both in chloroform and tetrahydrofuran. Particularly higher activity of PC lipase and greater degradation of PBSH were observed in chloroform. Molecular dynamics simulations data showed that root mean square fluctuation (RMSF) of the whole residues of PC lipase in tetrahydrofuran was greater than that in chloroform. In tetrahydrofuran,the solvent molecules could reach the active site and interact intensively with the active residues Ser87. This interaction destroyed the hydrogen bonding between Ser87 and His286. According to the results of molecular docking, the substrate containing hexane succinate (HS) docked more stably in the enzyme active site than butylene succinate (BS).

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期刊信息
  • 《高分子学报》
  • 中国科技核心期刊
  • 主管单位:中国科学院
  • 主办单位:中国化学会 中国科学院化学研究所
  • 主编:张希
  • 地址:北京市海淀区中关村北一街2号
  • 邮编:100190
  • 邮箱:gfzxb@iccas.ac.cn
  • 电话:010-62588927
  • 国际标准刊号:ISSN:1000-3304
  • 国内统一刊号:ISSN:11-1857/O6
  • 邮发代号:2-498
  • 获奖情况:
  • 国家优秀期刊二等奖,中科院优秀期刊二等奖,中国科协优秀期刊
  • 国内外数据库收录:
  • 俄罗斯文摘杂志,美国化学文摘(网络版),荷兰文摘与引文数据库,美国科学引文索引(扩展库),英国高分子图书馆,日本日本科学技术振兴机构数据库,中国中国科技核心期刊,中国北大核心期刊(2004版),中国北大核心期刊(2008版),中国北大核心期刊(2011版),中国北大核心期刊(2014版),中国北大核心期刊(2000版)
  • 被引量:19174