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Sequence and phylogenetic analyses of the chloroplast 16S rRNA, tufA, and rbcL genes from Bryopsis hypnoides
  • ISSN号:0254-4059
  • 期刊名称:《中国海洋湖沼学报:英文版》
  • 时间:0
  • 分类:Q987[生物学—遗传学;生物学—人类学] S852.659.5[农业科学—基础兽医学;农业科学—兽医学;农业科学—畜牧兽医]
  • 作者机构:[1]Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China
  • 相关基金:Supported by the National Natural Science Foundation of China (Nos. 30970302, 40806063, 30830015, B49082401)
中文摘要:

Using shotgun sequencing data, the complete sequences of chloroplast 16S rRNA and tufA genes were acquired from native specimens of Bryopsis hypnoides (Qingdao, China). There are two group I introns in the 16S rRNA gene, which is structurally similar to that of Caulerpa sertularioides (Bryopsidales, Chlorophyta). The chloroplast-encoded tufA gene sequence is 1 230 bp long, very AT-rich (61.5%), and is similar to previously published 16S rRNA sequences of bryopsidinean algae. Phylogenetic analyses based on chloroplast 16S rRNA and tufA gene sequence data support previous hypotheses that the Bryopsidineae, Halimedineae, and Ostreobidineae are three distinct lineages. These results also confirmed the exclusion of Avrainvillea from the family Udoteaceae. Phylogenetic analyses inferred that the genus Bryopsis as sister to Derbesia; however, this clade lacked robust nodal support. Moreover, the phylogenetic tree inferred from rbcL GenBank sequences, combined with the geographical distributions of Bryopsis species, identified a strongly supportive clade for three differently distributed Asian Bryopsis species. The preliminary results suggesting that these organisms are of distinct regional endemism.

英文摘要:

Using shotgun sequencing data, the complete sequences of chloroplast 16S rRNA and tufA genes were acquired from native specimens ofBryopsis hypnoides (Qingdao, China). There are two group I introns in the 16S rRNA gene, which is structurally similar to that of Caulerpa sertularioides (Bryopsidales, Chlorophyta). The chloroplast-encoded tufA gene sequence is 1 230 bp long, very AT-rich (61.5%), and is similar to previously published 16S rRNA sequences of bryopsidinean algae. Phylogenetic analyses based on chloroplast 16S rRNA and tufa gene sequence data support previous hypotheses that the Bryopsidineae, Halimedineae, and Ostreobidineae are three distinct lineages. These results also confirmed the exclusion of Avrainvillea from the family Udoteaceae. Phylogenetic analyses inferred that the genus Bryopsis as sister to Derbesia; however, this clade lacked robust nodal support. Moreover, the phylogenetic tree inferred from rbcL GenBank sequences, combined with the geographical distributions of Bryopsis species, identified a strongly supportive clade for three differently distributed Asian Bryopsis species. The preliminary results suggesting that these organisms are of distinct regional endemism.

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期刊信息
  • 《中国海洋湖沼学报:英文版》
  • 中国科技核心期刊
  • 主管单位:中国科学院 中国科协
  • 主办单位:中国海洋与湖沼学会
  • 主编:曾呈奎
  • 地址:中国青岛南海路7号
  • 邮编:266071
  • 邮箱:cjol@ms.qdio.ac.cn
  • 电话:0532-82898754
  • 国际标准刊号:ISSN:0254-4059
  • 国内统一刊号:ISSN:37-1150/P
  • 邮发代号:2-581
  • 获奖情况:
  • 第一、二届全国优秀科技期刊二等奖,中科院优秀期刊二等奖
  • 国内外数据库收录:
  • 俄罗斯文摘杂志,美国化学文摘(网络版),英国农业与生物科学研究中心文摘,荷兰文摘与引文数据库,美国地质文献预评数据库,美国剑桥科学文摘,美国科学引文索引(扩展库),美国生物科学数据库,英国科学文摘数据库,英国动物学记录,日本日本科学技术振兴机构数据库,中国中国科技核心期刊
  • 被引量:349