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生物信息学预测hsa-miR-26b的作用靶标及功能
  • ISSN号:1001-764X
  • 期刊名称:临床检验杂志
  • 时间:2012.7.15
  • 页码:527-530
  • 分类:R318.04[医药卫生—生物医学工程;医药卫生—基础医学]
  • 作者机构:[1]南京医科大学公共卫生学院,南京210029, [2]中国人民解放军第82医院检验科,江苏淮安223001, [3]南京医科大学附属南京妇幼保健院儿童保健科,南京210004, [4]南京医科大学儿科研究所,南京210029
  • 相关基金:国家自然科学基金(81170797);江苏省医学创新团队项目(LJ201108);江苏省自然科学基金(BK2011107).
  • 相关项目:miR-26b的生物学特征及其影响胰岛素敏感性的机制分析
作者: 赵亚萍|
中文摘要:

目的通过生物信息学预测hsa-miR-26b的靶基因,进一步分析其潜在功能,为其后续功能研究提供理论依据。方法用pubmed、谷歌(google)等工具检索hsa-miR-26b相关文献;用miRbase、NCBI、UCSC Browser和Promoter scan等在线工具分析hsa-miR-26b序列及所在基因组特征;用TargetScan、PicTar及miRanda预测hsa-miR-26b的靶基因;通过功能富集分析(GOanalysis)和信号转导通路富集分析(Pathway analysis),预测所得靶基因和已证实的靶标基因。结果研究证实hsa-miR-26b与神经发育、心肌肥大及各种肿瘤发生、发展有关;hsa-miR-26b位于CTDSP1基因内含子内,但可能具有与该基因不同的启动子;3种方法预测结果取交集获得可能靶标基因33个,合并已知靶标基因14个;hsa-miR-26b靶基因主要参与钠离子转运、溶酶体组织和生物形成、抑制细胞增殖、转运等生物学过程,涉及Notch、氨基糖类代谢、ABC转运子、VEGF及TGF-β等信号转导通路。结论 hsa-miR-26b的功能较为广泛,与发育、代谢等密切相关。

英文摘要:

Objective To predict the target genes and function of hsa-miR-26b by bioinformatics analysis, and provide the theoretical basis for the further research. Methods The literatures related to hsa-miR-26b were searched by PubMed and Google tools. The sequence and genome characteristics of hsa-miR-26b were analyzed on line by miRbase database, NCBI, UCSC Browser and Promoter scan. The target genes for hsa-miR-26b were predicted by TargetScan, PieTar and miranda, and the function of the target genes were demonstrated by Gene Ontology Enrichment(GO) and signal transduction pathway analysis. Results Hsa-miR-26b related to cardiac hypertrophy, neurogenesis and tumorigenesis. Hsa-miR-26b was located within the intron of CTDSP1 gene, but might have a promoter independent of CTDSP1. By searching the literatures and finding the common target genes from TargetScan, PicTar and miranda, 33 predicted targets and 14 known targets were obtained. GO analysis showed that the target genes of hsa-miR-26b might participate in the biological processes of sodium ion transport, lysosome organization and biogenesis, negative regulation of cell proliferation and trans- port. The pathway analysis showed that these target genes were mainly involved in Notch, aminosugars metabolism, ABC transporters, VEGF and TGF-beta signaling pathways. Conclusion Hsa-miR-26b may have extensive functions and closely relate to development, metabolism and etc.

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期刊信息
  • 《临床检验杂志》
  • 北大核心期刊(2011版)
  • 主管单位:江苏省卫生和计划生育委员会
  • 主办单位:江苏省医学会
  • 主编:许文荣
  • 地址:南京市中央路42号
  • 邮编:210008
  • 邮箱:editor@lcjyzz.com
  • 电话:025-83620683
  • 国际标准刊号:ISSN:1001-764X
  • 国内统一刊号:ISSN:32-1204/R
  • 邮发代号:28-104
  • 获奖情况:
  • 国家科技部中国科技论文统计源期刊,中国科学引文数据库医学类核心期刊,中国期刊方阵“双效”期刊
  • 国内外数据库收录:
  • 美国化学文摘(网络版),日本日本科学技术振兴机构数据库,中国中国科技核心期刊,中国北大核心期刊(2004版),中国北大核心期刊(2008版),中国北大核心期刊(2011版),中国北大核心期刊(2000版)
  • 被引量:21982