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11个猪种SLC6A14基因3个SNPs的群体遗传变异研究
  • ISSN号:0366-6964
  • 期刊名称:《畜牧兽医学报》
  • 时间:0
  • 分类:S828[农业科学—畜牧学;农业科学—畜牧兽医] S813.1[农业科学—畜牧学;农业科学—畜牧兽医]
  • 作者机构:[1]商丘师范学院生命科学系,商丘476000, [2]江西农业大学江西省动物生物技术重点开放实验室,南昌330045, [3]甘肃农业大学动物科学技术学院,兰州730070
  • 相关基金:国家自然科学基金(30400312);教育部博士学科点专项基金(20050410003)资助
中文摘要:

本研究旨在了解猪种的遗传变异、种群间的亲缘关系和遗传分化。以白色杜洛克×二花脸资源家系F0代的17头二花脸母猪和2头白色杜洛克公猪的DNA池为模板,通过直接测序在猪SLC6A14基因内识别4个SNPs,以3个突变位点(g.7944A〉T、c.1438G〉A、g.21063G〉T)为基础,通过PCR-RFLP技术,对11个中外猪种进行多态性检测。结果表明:在SLC6A14g.7944A〉T和g.21063G〉T2个突变位点上,所有检测猪种都出现变异,其中槐猪、二花脸猪在g.7944A〉T位点上变异显著(0.01〈P〈0.05);而里岔黑猪、槐猪、玉山黑猪、合作藏猪、八眉猪在g.21063G〉T内变异极显著(P〈0.01),以GT基因型为主,且二花脸猪中出现TT基因型;在SLC6A14c.1438G〉A突变位点上,3个欧洲猪种(长白、大白、杜洛克)没有出现变异,均为GG纯合型,而其他猪种在此位点上均存在变异;再根据11个猪种3个位点的多态性信息计算Nei氏遗传距离,由UPGMA法构建聚类图,说明中国地方猪种与外引猪种存在明显的遗传分化;由此得出中国地方猪种比外引猪种有高的遗传多样性和变异,且存在明显的遗传分化,品种间多数猪种符合品种地域分布和品种特性。

英文摘要:

The aim of this research was to understand the population genetic variation and relationship,genetic differentiation between populations.In this study,4 SNPs were identified in the porcine Solute Carrier Family 6 Member 14(SLC6A14)by directly sequencing DNA pools from 19 founder animals(2 White Duroc boars and 17 Erhualian sows)of a White Duroc × Erhualian resource population.The three mutation sites(c.1438G〉A,g.7944A〉T,g.21063G〉T)were chosen and used for detecting the polymorphism in 11 pig breeds by PCR-RFLP method.The results showed that 11 pig breeds presented varation at the g.7944A〉T and g.21063G〉T sites in the SLC6A14.Moreover Huai and Erhualian pigs have dominant varation at g.7944A〉T site in the SLC6A14(0.01〈P〈0.05),while Licha Black,Huai,Yushan Black,Hezuo Tibet,Bamei pigs also have significant varation at g.21063G〉T site in the SLC6A14(P〈0.01),AT was dominant genotype.No variation was detected in the European pig populations(Landrace,Large White and Duroc).only GG genotype was presented.Whereas variation was presented at the c.1438G〉A site of 8 Chinese native pig breeds.The genetic distance of 11 pig populations were calculated from 3 sites polymorphism data.The cluster tree was constructed by UPMGA method.The results showed that Chinese local pig populations had distinct genetic differentiation with exotic pig populations.It was concluded that Chinese indigenous pig breeds have higher genetic variation and diversity than the exotic pig breeds at the three SNPs,genetic differentiation existed between Chinese pig populations and exotic breeds.The majority of pig breeds were consistent with the geographical distribution and breed characteristic.

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期刊信息
  • 《畜牧兽医学报》
  • 北大核心期刊(2011版)
  • 主管单位:中国科学技术协会
  • 主办单位:中国畜牧兽医学会
  • 主编:文杰
  • 地址:北京海淀区圆明园西路2号中国农科院畜牧所
  • 邮编:100193
  • 邮箱:xmsyxb@263.net
  • 电话:010-62815987 62816996
  • 国际标准刊号:ISSN:0366-6964
  • 国内统一刊号:ISSN:11-1985/S
  • 邮发代号:82-453
  • 获奖情况:
  • 1992年北京优秀期刊奖,1998年、2000年在全国畜牧兽医优秀期刊评比中获一等奖
  • 国内外数据库收录:
  • 美国化学文摘(网络版),英国农业与生物科学研究中心文摘,波兰哥白尼索引,美国剑桥科学文摘,英国动物学记录,日本日本科学技术振兴机构数据库,中国中国科技核心期刊,中国北大核心期刊(2004版),中国北大核心期刊(2008版),中国北大核心期刊(2011版),中国北大核心期刊(2014版),瑞典开放获取期刊指南,中国北大核心期刊(2000版)
  • 被引量:21857