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陆地棉Pht1家族成员的全基因组鉴定及表达分析
  • ISSN号:1002-7807
  • 期刊名称:《棉花学报》
  • 时间:0
  • 分类:S562.03[农业科学—作物学]
  • 作者机构:[1]河南科技学院生命科技学院/现代生物育种河南省协同创新中心,河南新乡453003, [2]平顶山学院,河南平顶山467000
  • 相关基金:国家自然科学基金(31601347);河南省高等学校重点科研项目计划(15A210001);河南科技学院高层次人才计划(2014004)
中文摘要:

【目的】磷是植物三大必需矿质元素之一,对植物的生长发育至关重要。Pht1家族的磷酸盐转运蛋白在植物磷吸收和转运方面具有重要作用,然而关于该基因的系统研究工作尚很少开展。本研究旨在进行Pht1家族成员全基因组鉴定和表达模式分析。【方法】通过生物信息学的方法对陆地棉Pht1家族成员的基因结构、编码蛋白质的结构、染色体定位、基因复制和表达情况等进行全面分析。【结果】(1)在陆地棉的基因组中共鉴定到17个磷酸盐转运蛋白基因(GhPT),其中A亚组包含8个GhPT,D亚组包含9个GhPT;(2)棉花GhPT蛋白之间序列相似性很高,并均具有12个疏水的跨膜区域;(3)进化分析表明这些GhPT蛋白主要聚为2大组(GroupⅠ和GroupⅡ),位于同一组的GhPT的编码基因大部分具有相似的内含子/外显子分布模式;(4)17个GhPT基因不均匀分布在A亚组和D亚组中的5条染色体上,串联复制和片段复制可能导致GhPT基因在陆地棉中的扩增;(5)表达模式分析表明,GhPT6和GhPT14在根中表达量最高,且同时响应低磷和低钾胁迫诱导并上调表达。【结论】这些结果将有助于深入了解Pht1家族基因的功能及离子信号途径相互作用的分子机制。

英文摘要:

[Objective] Phosphorus is one of the three most essential macronutrients required by plants, and is important for plant growth and development. Phosphate (Pi) transporter proteins in the Phtl family play important roles in Pi uptake and translocation in plants. However, few systematic studies have been performed on this topic. In this study, we aimed to identify the Phtl family members in the upland cotton genome and analyze their expression patterns. [Method] The gene structure, chromosomal localization, gene duplication, and expression of Phil family members in upland cotton, as well as the structure of the encoded protein, were analyzed using bioinformatics methods. [Results] (1) A total of 17 GhPT genes were identified in the upland cotton genome, with eight and nine GhPT genes distributed on the A and D subgenomes, respectively. (2) The GhPT protein sequences were highly similar, and included 12 transmembrane regions. (3) The GhPT proteins were divided into Groups I and II based on phylogenetic analyses. Most GhPTgenes within the same group had similar exon and intron organizations. (4) The chromosomal distribution pattern revealed that GhPTgenes were unevenly distributed on five chromosomes of the A and D subgenomes. Segmental and tandem duplications were the major contributors to the increase in the number of GhPT genes in upland cotton. (5) The GhPTexpression patterns revealed that GhPT6 and GhPTI4 were highly expressed in roots. Moreover, the expression levels of these genes were up-regulated under low phosphorus and low potassium conditions. [Conclusion] These results may help to elucidate the functions of GhPTgenes and the molecular mechanisms underlying the cross-talk among ion signals in plants.

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期刊信息
  • 《棉花学报》
  • 北大核心期刊(2011版)
  • 主管单位:中国科协
  • 主办单位:中国农学会
  • 主编:杨子山
  • 地址:河南省安阳市文峰区黄河大道38号中棉所办公区
  • 邮编:455000
  • 邮箱:journal@cricaas.com.cn
  • 电话:0372-2525361/362/369
  • 国际标准刊号:ISSN:1002-7807
  • 国内统一刊号:ISSN:41-1163/S
  • 邮发代号:36-63
  • 获奖情况:
  • 国内外数据库收录:
  • 英国农业与生物科学研究中心文摘,日本日本科学技术振兴机构数据库,中国中国科技核心期刊,中国北大核心期刊(2004版),中国北大核心期刊(2008版),中国北大核心期刊(2011版),中国北大核心期刊(2014版),中国北大核心期刊(2000版)
  • 被引量:9815