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茶树简化EcoTILLING技术的建立
  • 期刊名称:茶叶科学
  • 时间:0
  • 页码:19-26
  • 分类:S571.1[农业科学—茶叶生产加工;农业科学—作物学] Q55[生物学—生物化学]
  • 作者机构:[1]中国农业科学院茶叶研究所茶树资源与改良研究中心/国家茶树改良中心,浙江杭州310008
  • 相关基金:国家“863”计划(2006AA10Z171)、国家自然科学基金(30901159)、“现代农业(茶叶)产业技术体系建设专项资金”、“十一五”国家科技支撑计划(2006BAD13806)、公益性行业(农业)科研专项(3-35-02)和浙江省自然科学基金(Y3090041)资助
  • 相关项目:茶树咖啡碱合成相关基因的关联分析及功能标记开发
中文摘要:

EcoTILLING (Ecotype Targeting Induced Local Lesions IN Genomes)可快速检测自然群体中的SNP(Single Nucleotide Polymorphism)等DNA变异。第一次建立了简化的茶树EcoTILLING技术体系:首先筛选扩增目的基因的特异PCR引物;然后通过CELI酶切PCR产物优化实验,确定酶切时间20min、10×buffer组成为250mmol/L Tris-HCI(pH7.4)、150mmol/LKCI、15mmol/LMgSO4、4lag/mLBSA和0.04%Triton x-100,反应温度为47.5℃,酶量为1.8μL CJE(Celery Juice Extract)/10μL反应体系时,酶切的谱带信号较强、特异性高;初步确定合适的非变性聚丙烯酰胺凝胶电泳检测条件为凝胶浓度5%、上样量4~5μL、有效分离长度要达到15cm。利用上述简化的EcoTILLING对6份茶树种质870bp的PPO基因片段实现了分型,经测序验证酶切产生的谱带与6份种质内部或不同种质间的SNP位置吻合。

英文摘要:

EcoTILLING(Ecotype Targeting Induced Local Lesions In Genomes) had been used as a SNP(Single Nucleotide Polymorphism) discovery tool to examine DNA variation in natural populations. A simple EcoTILLING technique for tea plant was established. Firstly, specific PCR primers for the amplification of the target gene were screened out. Then through comparison, a fine CELI enzyme digestion could be resulted using 20min with 10× buffer containing 250 mmol/L Tris-HC1 (pH7.4), 150 mmol/L KCI, 15 mmol/L MgSOa, 4 μg/mL BSA and 0.04%Triton x-100, and 1.8 μL CJE(Celery Juice Extract)/101aL reacting solution at 47.5℃. Moreover, a good picture could be obtained when using 5% polyacrylamide gels (PAGE), adding 4~5 laL digesting products in PAGE electrophoresis. The 870 bp fragment within the PPO (Polyphenol Oxidase) gene of 6 tea germplasms was distinguished from each other using the simplified EcoTILLING. The CEL I digested bands were ascertained that according to the position of SNP in or between the 6 accessions through sequencing verification.

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