E.coli解旋酶Ⅱ(UvrD)是一种在甲基定向错配修复(methyl-directed mismatchrepair,MMR)和核苷酸切除修复(nucleotide excisionrepair,NER)中起重要作用的3′→5′解旋酶.本研究对大肠杆菌的UvrD进行了重组表达和纯化,并检测其ATP酶比活性(87U/mg).利用表面等离子共振(surface plasmon resonance,SPR)方法实时检测了UvrD与同源双链DNA分子(homoduplex DNA)和异源双链DNA分子(heteroduplex DNA)结合的动态过程以及镁离子对此过程的影响.结果显示,UvrD与DNA的平衡解离常数在10^-7mol/L水平.DNA分子中错配碱基的存在,在一定程度上影响了二者的结合,而镁离子不是两者结合的必要因素.本研究还利用原子力显微镜(atomic force microscopy,AFM)方法在单分子水平上观察到UvrD将双链DNA解链形成单链DNA的中间体.此研究得到的UvrD与DNA结合的动力学信息数据以及解螺旋中间体的单分子可视化,为进一步深入研究UvrD在修复过程中的作用机制奠定了基础.
E. coli helicase Ⅱ(UvrD), which is classified as a 3′ to 5′ helicase, plays essential roles in methyl-directed mismatch repair (MMR) and nucleotide excision repair (NER). In this report, recombinant UvrD was expressed and purified, and its ATPase specific catalytic activity was determined to be 87 U/mg, The kinetics and affinity of UvrD interactions with homo-duplex DNA and hetero-duplex DNA were also investigated using surface plasmon resonance (SPR) technology. The equilibrium dissociation constants of UvrD and DNA were evaluated to be in the 10^-7 mol/L range. Unwound DNA intermediate following UvrD treatments were observed by atomic force microscopy (AFM) at the level of single-molecule resolution. The results have shown that mismatched base pairs could affect the binding of UvrD to DNA, and Mg^2+ was not necessary for this process. Our results have provided valuable information that will help further investigations of the molecular mechanism(s) in UvrD-mediated mismatch repair process.