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Target-to-Background Separation for Spectral Unmixing in In-Vivo Fluorescence Imaging
  • 分类:Q632[生物学—生物物理学]
  • 作者机构:[1](School of Biomedical Engineering, Shanghai Jiaotong University, Shanghai 200240, China)
  • 相关基金:the Small Animal Imaging Project sup- ported by Geneway Biotech International Trading Co., Ltd. (No. 06-545) and the National Natural Science Foundation of China (Nos. 61271320, 60872102 and 60402021) Acknowledgement The authors would like to thank Dr. Zhao Yong-gang (赵勇刚) for inspiring dis- cussion, Tang Tian-heng (汤天衡) and Tan Li-ming (谭黎明) for their contributing to the project, Dr. Mai Jun-hua (麦俊华) for supporting the experiments for in-vivo fluorescence imaging and Dr. Feng Yan-bin for providing the emission spectra for Alexa Fluor dyes.
中文摘要:

We present a novel fluorescence spectral unmixing based on target-to-background separation preprocessing, which effectively separates the multi-target fluorescence from all background autofluorescence(BF)without any hardware-based BF acquisition and tissue specific BF estimation. Specifically, we first enhance the intrinsic accumulation contrast in target-to-background fluorescence using h-dome transformation; then separate multi-target fluorescence areas from the background in sparse multispectral data utilizing kernel maximum autocorrelation factor analysis; we further use fast marching-based image inpainting method to patch up the removed target fluorescence areas and reconstruct the multispectral BF; with the BF matrix being subtracted from the original data, the multi-target fluorophores are easily unmixed from the subtracted data using multivariate curve resolution-alternating least squares method. In two preliminary in-vivo experiments, the proposed method demonstrated excellent performance to unmix multi-target fluorescences while other state-of-art unmixing methods failed to get desired results.

英文摘要:

We present a novel fluorescence spectral unmixing based on target-to-background separation pre- processing, which effectively separates the multi-target fluorescence from all background autofluorescence (BF) without any hardware-based BF acquisition and tissue specific BF estimation. Specifically, we first enhance the intrinsic accumulation contrast in target-to-background fluorescence using h-dome transformation; then separate multi-target fluorescence areas from the background in sparse multispectral data utilizing kernel maximum auto- correlation factor analysis; we further use fast marching-based image inpainting method to patch up the removed target fluorescence areas and reconstruct the multispectral BF; with the BF matrix being subtracted from the original data, the multi-target fluorophores are easily unmixed from the subtracted data using multivariate curve resolution-alternating least squares method. In two preliminary in-vivo experiments, the proposed method demon- strated excellent performance to unmix multi-target fluorescences while other state-of-art unmixing methods failed to get desired results.

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