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基因芯片联合Sanger测序技术在非综合征型聋患者基因诊断中的应用
  • ISSN号:1006-7299
  • 期刊名称:《听力学及言语疾病杂志》
  • 时间:0
  • 分类:R764.43[医药卫生—耳鼻咽喉科;医药卫生—临床医学]
  • 作者机构:[1]广西壮族自治区听力言语康复中心,南宁530001, [2]柳州市出生缺陷预防与控制重点实验室, [3]柳州市妇幼保健院检验科
  • 相关基金:国家自然科学基金项目(81360159)、广西科技攻关项目(桂科攻14124004-1-20)、柳州市科技攻关项目(2014J030401)、柳州市科学研究与技术开发计划项目研究成果(2014G020404)联合资助
中文摘要:

目的 应用基因芯片联合Sanger测序技术检测广西壮族自治区听力言语康复中心非综合征型聋患者的基因突变谱系及基因型,为基因诊断、遗传咨询及防聋治聋提供参考。方法 对广西壮族自治区听力言语康复中心136例双侧重度及以上程度感音神经性非综合征型聋患儿采集外周血并提取基因组DNA,用遗传性聋基因芯片对4个耳聋易感基因的9个突变位点(GJB2基因:c.35delG、c.235delC、c.176del16、c.299delAT;GJB3基因:c.538C〉T;SLC26A4基因:c.919-2A〉G、c.2168A〉G;mtDNA 12SrRNA基因:m.1494C〉T、m.1555A〉G)进行分析。基因芯片技术未确诊的样本采用Sanger测序法进一步检测。结果 通过基因芯片技术在20例聋儿中检出GJB2、SLC26A4和线粒体12SrRNA基因突变,总检出率为14.71%(20/136);结合Sanger测序技术,34例聋儿检出GJB2、SLC26A4和12SrRNA基因突变,总检出率为25%(34/136),发现6种基因芯片技术未检出的SLC26A4突变位点(c.259G〉T、c.754C〉T、c.1229C〉T、c.1548_1549insC、c.1705+5A〉G和c.2086C〉T)。GJB2基因以c.235delC突变为主,SLC26A4基因以c.919-2A〉G、c.754C〉T和c.1229C〉T为主;GJB2和SLC26A4基因突变者占本组病例基因突变总例数的38.24%(13/34)和58.82%(20/34)。结论 基因芯片联合Sanger测序技术可以提高非综合征型聋患者基因突变的检出率;广西壮族自治区听力言语康复中心非综合征型聋患者热点突变基因以GJB2和SLC26A4基因为常见。

英文摘要:

Objective To study genotypes in nonsyndromic hearing loss(NSHL)patients from Guangxi Zhuang Autonomous Region hearing speech rehabilitation center using DNA microarray in combination with Sanger sequencing.Methods Deaf patients received routine physical and otorhinolaryngoloical examinations as well as pure tone autiometry.Brainstem auditory evoked potential test was performed in uncooperative children.Blood samples were obtained from a total of 136 patients,male 81,female 55,age from one year five month to seventeen,having nonsyndromic hearing loss.Genomic DNA was extracted and then 9hot mutation spots in 4susceptibility genes were detected by DNA microarray.GJB2 and SLC26A was further detected by Sanger sequencing in the patients with negative results and heterozygotes.Results Among the 136 patients with nonsyndromic hearing loss,20 cases were positive for GJB2 gene,SLC26A4gene or mitochondrial 12 SrRNA gene mutations.There were 14.71%(20/136)patients were positive for hot mutation spots in the deafness related genes,25%(34/136)patients carried mutations of deafness related genes using DNA microarray in combination with Sanger sequencing.Six SLC26A4 rare mutations(c.259GT,c.754CT,c.1229CT,c.1548_1549insC,c.1705+5AG and c.2086CT)were detected by Sanger sequencing.c.235 delC was the most common mutation in GJB2 gene.c.919-2AG,c.754CT and c.1229CT were the common mutations in SLC26A4 gene.The mutation rate of GJB2 and SLC26A4was 38.24%.and 58.82%,respectively.Conclusion Prevalent deafness-associated gene mutations in the nine loci studied were less frequently detected in nonsyndromic hearing loss patients from Guangxi Zhuang Autonomous Region hearing speech rehabilitation center.It can improve the detection rate of deafness gene mutations by using gene microarray in combination with Sanger sequencing.GJB2 and SLC26A4are the common causative genes.

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期刊信息
  • 《听力学及言语疾病杂志》
  • 中国科技核心期刊
  • 主管单位:中华人民共和国教育部
  • 主办单位:武汉大学人民医院
  • 主编:陶泽璋 韩德民
  • 地址:武汉市武昌区张之洞路9号
  • 邮编:430060
  • 邮箱:jasptl@126.com
  • 电话:027-88043958
  • 国际标准刊号:ISSN:1006-7299
  • 国内统一刊号:ISSN:42-1391/R
  • 邮发代号:38-224
  • 获奖情况:
  • 中国科技论文统计源期刊
  • 国内外数据库收录:
  • 美国化学文摘(网络版),中国中国科技核心期刊,中国北大核心期刊(2008版),中国北大核心期刊(2011版),中国北大核心期刊(2014版)
  • 被引量:8438