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Effects of Variant rs346473 in ARHGAP24 Gene on Disease Progression of HBV Infection in Han Chinese Population
  • ISSN号:1007-3418
  • 期刊名称:《中华肝脏病杂志》
  • 时间:0
  • 分类:Q347[生物学—遗传学] Q78[生物学—分子生物学]
  • 作者机构:[1]Institute of Liver Disease, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan 430030, China, [2]Liaocheng People's Hospital Liaocheng 252000, China, [3]Department of Infection Disease, Union Hospital Tongji Medical College, Huazhong University of Science and Technology, Wuhan 430022, China
  • 相关基金:supported by the national basic research program of China (Grant number:No. 2007CB512900); the national natural science foundation of China (Grant number:No. 30872237)
中文摘要:

Host genetic,environmental and viral factors are classified as three categories that determine clinical outcomes of hepatitis B virus(HBV) infection.The objective of this study was to detect the associations between polymorphisms rs346473 and rs346482 in Rho GTPase-activating protein 24(ARHGAP24) gene and disease progression of HBV infection in Han Chinese population.These two SNPs were found by our DNA pooling using Affymetrix Genome-Wide Human Mapping SNP6.0 Array in HBV carriers,and verified by using TaqMan 7900HT Sequence Detection System with 758 progressed HBV carriers versus 300 asymptomatic HBV carriers(AsC) in a discovery phase and 971 progressed HBV carriers versus 328 AsC in a replication phase.Multivariable logistic regression revealed that individuals with genotype TT at variant rs346473 displayed remarkable correlations with disease progression of HBV infection both in the discovery phase(OR,2.693;95% CI,1.928-3.760;P=6.2×10-9;additive model) and the replication phase(OR,1.490;95% CI,1.104-2.012;P=9.0×10-3;additive model).These two SNPs were in strong linkage disequilibrium with D’=0.99 and r2=0.951,and haplotype TT disclosed an increased susceptibility to HBV progression(OR,1.980;95% CI,1.538-2.545;P=8.1×10-8).These findings suggest that polymorphism rs346473 in the ARHGAP24 gene might be a part of the genetic variants underlying the susceptibility of HBV carriers to disease progression.

英文摘要:

Host genetic,environmental and viral factors are classified as three categories that determine clinical outcomes of hepatitis B virus(HBV) infection.The objective of this study was to detect the associations between polymorphisms rs346473 and rs346482 in Rho GTPase-activating protein 24(ARHGAP24) gene and disease progression of HBV infection in Han Chinese population.These two SNPs were found by our DNA pooling using Affymetrix Genome-Wide Human Mapping SNP6.0 Array in HBV carriers,and verified by using TaqMan 7900HT Sequence Detection System with 758 progressed HBV carriers versus 300 asymptomatic HBV carriers(AsC) in a discovery phase and 971 progressed HBV carriers versus 328 AsC in a replication phase.Multivariable logistic regression revealed that individuals with genotype TT at variant rs346473 displayed remarkable correlations with disease progression of HBV infection both in the discovery phase(OR,2.693;95% CI,1.928-3.760;P=6.2×10-9;additive model) and the replication phase(OR,1.490;95% CI,1.104-2.012;P=9.0×10-3;additive model).These two SNPs were in strong linkage disequilibrium with D'=0.99 and r2=0.951,and haplotype TT disclosed an increased susceptibility to HBV progression(OR,1.980;95% CI,1.538-2.545;P=8.1×10-8).These findings suggest that polymorphism rs346473 in the ARHGAP24 gene might be a part of the genetic variants underlying the susceptibility of HBV carriers to disease progression.

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期刊信息
  • 《中华肝脏病杂志》
  • 北大核心期刊(2011版)
  • 主管单位:中国科学技术协会
  • 主办单位:中华医学会
  • 主编:
  • 地址:重庆市渝中区临江路74号
  • 邮编:400010
  • 邮箱:chnhepa@online.cq.cn
  • 电话:023-63706512
  • 国际标准刊号:ISSN:1007-3418
  • 国内统一刊号:ISSN:50-1113/R
  • 邮发代号:78-56
  • 获奖情况:
  • 中国期刊方阵“双效”期刊
  • 国内外数据库收录:
  • 美国化学文摘(网络版),荷兰文摘与引文数据库,美国生物医学检索系统,日本日本科学技术振兴机构数据库,中国中国科技核心期刊,中国北大核心期刊(2004版),中国北大核心期刊(2008版),中国北大核心期刊(2011版),中国北大核心期刊(2014版)
  • 被引量:47128