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Applications of three DNA barcodes in assorting intertidal red macroalgal flora in Qingdao, China
  • ISSN号:1672-5182
  • 期刊名称:Journal of Ocean University of China
  • 时间:2013.3
  • 页码:139-145
  • 分类:Q178.531[生物学—水生生物学;生物学—普通生物学] S66[农业科学—果树学;农业科学—园艺学]
  • 作者机构:[1]Key Laboratory of Experimental Marine Biology, Marine Biological Culture Collection Centre, Institute of Oceanology,Chinese Academy of Sciences, Qingdao 266071, P. R. China, [2]University of Chinese Academy of Sciences, Beij'ing 100049, P. R. China
  • 相关基金:supported by the National Special Research Fund for Non-Profit Sector (Agriculture) (No. 200903030);the National Natural Science Foundation of China (No.41176135)
  • 相关项目:我国北方沿海潮下带大型海藻资源研究与利用
中文摘要:

This study is part of the endeavor to construct a comprehensive DNA barcoding database for common seaweeds in China. Identifications of red seaweeds, which have simple morphology and anatomy, are sometimes difficult solely depending on morphological characteristics. In recent years, DNA barcode technique has become a more and more effective tool to help solve some of the taxonomic difficulties. Some DNA markers such as COI (cytochrome oxidase subunitⅠ) are proposed as standardized DNA barcodes for all seaweed species. In this study, COI, UPA (universal plastid amplicon, domain V of 23S rRNA), and ITS (nuclear internal transcribed spacer) were employed to analyze common species of intertidal red seaweeds in Qingdao (119.3 -121 E, 35.35 -37.09 N). The applicability of using one or a few combined barcodes to identify red seaweed species was tested. The results indicated that COI is a sensitive marker at species level. However, not all the tested species gave PCR amplification products due to lack of the universal primers. The second barcode UPA had effective universal primers but needed to be tested for the effectiveness of resolving closely related species. More than one ITS sequence types were found in some species in this investigation, which might lead to confusion in further analysis. Therefore ITS sequence is not recommended as a universal barcode for seaweeds identification.

英文摘要:

This study is part of the endeavor to construct a comprehensive DNA barcoding database for common seaweeds in China. Identifications of red seaweeds, which have simple morphology and anatomy, are sometimes difficult solely depending on morphological characteristics. In recent years, DNA barcode technique has become a more and more effective tool to help solve some of the taxonomic difficulties. Some DNA markers such as COI(cytochrome oxidase subunit I) are proposed as standardized DNA barcodes for all seaweed species. In this study, COI, UPA (universal plastid amplicon, domain V of 23S rRNA), and ITS (nuclear internal transcribed spacer) were employed to analyze common species of intertidal red seaweeds in Qingdao (119.3°-121°E, 35.35°-37.09°N). The applicability of using one or a few combined barcodes to identify red seaweed species was tested. The results indicated that COI is a sensitive marker at species level. However, not all the tested species gave PCR amplification products due to lack of the universal primers. The second barcode UPA had effective universal primers but needed to be tested for the effectiveness of resolving closely related species. More than one ITS sequence types were found in some species in this investigation, which might lead to confusion in further analysis. Therefore ITS sequence is not recommended as a universal barcode for seaweeds identification.

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期刊信息
  • 《中国海洋大学学报:英文版》
  • 中国科技核心期刊
  • 主管单位:教育部
  • 主办单位:中国海洋大学
  • 主编:文圣常
  • 地址:青岛市松岭路238号
  • 邮编:266100
  • 邮箱:xbywb@ouc.edu.cn
  • 电话:0532-66782408
  • 国际标准刊号:ISSN:1672-5182
  • 国内统一刊号:ISSN:37-1415/P
  • 邮发代号:24-89
  • 获奖情况:
  • 被美国化学文摘(CA)和美国剑桥科学文摘(CSA)收录
  • 国内外数据库收录:
  • 俄罗斯文摘杂志,美国化学文摘(网络版),英国农业与生物科学研究中心文摘,荷兰文摘与引文数据库,美国剑桥科学文摘,美国科学引文索引(扩展库),美国生物科学数据库,英国动物学记录,中国中国科技核心期刊
  • 被引量:123