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从生物大数据到知识大发现:十年进展与未来展望
  • ISSN号:0023-074X
  • 期刊名称:《科学通报》
  • 时间:0
  • 分类:Q523.8[生物学—生物化学]
  • 作者机构:[1]清华大学自动化系,计算机科学与技术系,生命科学学院,教育部生物信息学重点实验室,北京100084, [2]清华信息科学与技术国家实验室生物信息学研究部,北京100084, [3]清华大学数据科学研究院医疗健康大数据研究中心,北京100084
  • 相关基金:国家重点基础研究发展计划(2012CB316500)资助
中文摘要:

生物和医疗大数据的快速大量积累是当今生命科学领域的一个重要特征,但从这些大数据能否获得关于生命现象规律的重大知识发现,是人们更关心的关键问题,也是2005年Science杂志展望的125个最具挑战性问题之一.本文从新一代DNA测序技术发展以及医学遗传学、合成生物学、精准医学、微生物组学等几个方面,回顾了近十年来生物大数据的重要发展和已经由此带来的科学进步,并对未来的发展方向进行了展望.

英文摘要:

The quick accumulation of biological and medical big data is an important characteristic of current life sciences. Typical representatives of such big data are omics data obtained with the so-called next-generation sequencing or NGS technology, including genomic data, epigenomic data, metagenomic data, transcriptomics data, etc. The amount of data is overwhelming, but our key interest is whether such big data can lead to big discovery on the rules or mechanisms behind life. The question "how will big pictures emerge from a sea of biological data" was asked as one of the 125 most challenging questions by the Science magazine in 2005. Now more than ten years have passed. This article provides a brief review and perspective on the development of next-generation DNA sequencing technology in the past decade, as well as its applications and impacts on the fields of medical genetics, synthetic biology, precision medicine and microbiome studies. The big biological data have already brought new discoveries in biology although yet more will be expected and such discoveries have already shown promising applications in medical practices. The wide availability of DNA sequencing especially its rapidly decreasing cost is revolutionizing the study of genetic diseases. Large-scale genome-wide association studies(GWAS) and exome-sequencing studies have discovered many genes that are associated with many types of diseases. Some have already began to be used in clinical diagnosis. Accompanying the development of technologies for reading genomes, the genome editing technology shows the other side of the story: editing and writing genomes. Such technologies are enabling the systematic understanding of complex biological systems, and point to promising new approaches for disease treatment and prevention. Cancer studies are a major field that benefited the most from omics data. People are gaining more and more understanding in the development of cancer, and new taxonomy of cancer types based on genomic and epigenomic data brin

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期刊信息
  • 《科学通报》
  • 北大核心期刊(2011版)
  • 主管单位:中国科学院
  • 主办单位:中国科学院
  • 主编:周光召
  • 地址:北京东黄城根北街16号
  • 邮编:100717
  • 邮箱:csb@scichina.org
  • 电话:010-64036120 64012686
  • 国际标准刊号:ISSN:0023-074X
  • 国内统一刊号:ISSN:11-1784/N
  • 邮发代号:80-213
  • 获奖情况:
  • 首届国家期刊奖,中国期刊方阵“双高”期刊,第三届中国出版政府奖
  • 国内外数据库收录:
  • 美国化学文摘(网络版),美国数学评论(网络版),美国工程索引,日本日本科学技术振兴机构数据库,中国中国科技核心期刊,中国北大核心期刊(2004版),中国北大核心期刊(2008版),中国北大核心期刊(2011版),中国北大核心期刊(2014版),中国北大核心期刊(2000版)
  • 被引量:81792