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火龙果Ty3-gypsy类反转录转座子反转录酶序列的克隆及分析
  • ISSN号:1009-9980
  • 期刊名称:《果树学报》
  • 分类:S667.9[农业科学—果树学;农业科学—园艺学]
  • 作者机构:[1]贵州大学农业生物工程研究院/生命科学学院·山地植物资源保护与种质创新教育部重点实验室,贵阳550025, [2]贵州省安顺市农业科学院,贵州安顺561000, [3]贵州大学林学院,贵阳550025
  • 相关基金:国家自然科学基金(31560549,31260464)
中文摘要:

【目的】克隆Ty3-gypsy类反转录转座子反转录酶(RT)序列并分析其特性,为火龙果遗传变异和进化研究提供新的信息。【方法】根据Ty3-gypsy类反转录转座子RT保守区设计简并引物,从红肉和白肉火龙果及其突变体中扩增出430 bp左右的目标片段,回收、克隆、测序获得RT序列,并进行生物信息学分析;采用RT-PCR检测其转录活性。【结果】共获得82条RT序列,其中有55条序列发生终止密码子突变,5条序列发生移码突变;经RT序列对比,火龙果与水稻、拟南芥有较高的同源性;3条RT序列具有转录活性。【结论】火龙果Ty3-gypsy类反转录转座子RT序列具有高度异质性,部分序列具有转录活性,与其他物种存在反转录转座子的横向传递。

英文摘要:

【Objective】In order to provide a fundamental clue for genetic evolution and variation mecha-nisms in Hylocereus undatus, reverse transcriptase(RT) sequences of Ty3- gypsy retrotransposon werecloned and analyzed in the genome of pitaya.【Methods】Using degenerate oligonucleotide primers basedon the conserved domains of the Ty3-gypsy LTR retrotransposon RT sequence, 430 bp fragment was am-plified through a polymerase chain reaction(PCR) from the genomic DNA of red-flesh pitaya(‘Xinhon-glong'), white-flesh pitaya(‘Baiyulong') plants and their mutants. The amplicons were cloned, then se-quenced and analyzed. Sequence homology queries for nucleotide and deduced amino acid sequences ofTy3-gypsy LTR retrotransposon RT sequences were performed using BLASTn and BLASTx(https://blast.ncbi.nlm.nih.gov/Blast.cgi), respectively. Multiple sequence alignments were conducted using the ClustalW program. Phylogenetic trees were generated using MEGA 6.06 software by p-distance and neighbor-joining methods by 1 000 bootstrap replications. Special primers were designed at the basis of all RT se-quences of pitaya using Primer Premier 5.0 software, and were employed to detect their transcriptional ac-tivities from the plants grown normally in the field and the tissue culture seedlings obtained by reversetranscription PCR(RT-PCR). RT-PCR was carried out with the corresponding c DNA, which was reversetranscribed from the total RNA of the test samples(‘Zihonglong'). The PCR products were electropho-resed in 1% agarose gel and observed under UV light after staining with Goldview.【Results】The PCR am-plification with degenerate primers yielded an expected 430 bp fragment. The fragment within this bandwas recovered and sequenced. Totally, 31 RT sequences from the red-flesh type and 51 from the white-flesh type were obtained, which were named HURT. Sequences ranged in length from 431 bp to 444 bp,most of which were AT-rich, with AT content of 48.6%-63.0%. When the nucleotide sequences of the R

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期刊信息
  • 《果树学报》
  • 北大核心期刊(2011版)
  • 主管单位:农业部
  • 主办单位:中国农业科学院郑州果树研究所
  • 主编:王志强
  • 地址:河南省郑州市航海东路南中国农业科学院郑州果树研究所
  • 邮编:450009
  • 邮箱:chinagsxb@163.con
  • 电话:0371-65330928 653387308
  • 国际标准刊号:ISSN:1009-9980
  • 国内统一刊号:ISSN:41-1308/S
  • 邮发代号:36-93
  • 获奖情况:
  • 获河南省优秀期刊二等奖
  • 国内外数据库收录:
  • 俄罗斯文摘杂志,美国化学文摘(网络版),英国农业与生物科学研究中心文摘,美国剑桥科学文摘,日本日本科学技术振兴机构数据库,中国中国科技核心期刊,中国北大核心期刊(2004版),中国北大核心期刊(2008版),中国北大核心期刊(2011版),中国北大核心期刊(2014版)
  • 被引量:18699