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荧光原位杂交技术检测土壤中博德特氏菌探针的设计与应用
  • ISSN号:0564-3929
  • 期刊名称:土壤学报
  • 时间:0
  • 页码:51-57
  • 语言:中文
  • 分类:X172[环境科学与工程—环境科学] X53[环境科学与工程—环境工程]
  • 作者机构:[1]土壤与农业可持续发展国家重点实验室(中国科学院南京土壤研究所),南京210008, [2]Institute of Soil Ecology, GSF-German National Research Center for Environment and Health, 85764 Neuherberg, Germany
  • 相关基金:国家自然科学基金项目(20707028)、江苏省自然科学基金项目(BK2007264)、巾国科学院海外合作伙伴计划项目(CXTD-Z2005-4)和留学人员科技活动择优资助项目资助
中文摘要:

根据博德特氏菌(Bordetella sp.)的16SrRNA基因序列,设计荧光原位杂交(FISH)检测博德特氏菌的寡核苷酸探针FW_iso_62和Fw_iso_761,存20%~60%甲酰胺均有很强的荧光信号。采用探针FW_iso_62及其竞争探针,结合Nycodenz和DAPI技术,建立定量检测土壤中博德特氏菌的DAPI—FISH方法。该方法可排除土壤颗粒的自动荧光对细菌信号的掩盖,保证图片中有大量微生物供统计分析,还能有效保存微生物的原位信息。应用该方法分析土壤中1,2,4-三氯苯降解菌-博德特氏菌,结果未受氯苯污染的农田土壤中没有检测到博德特氏菌,而氯苯污染土壤巾检测到大量的博德特氏菌,每克土壤含3.78×10^6个。将该污染土壤中分离的博德特氏降解菌及其降斛菌群接种至农田土壤中,降解菌的数量均随培养而增加,个月后分别占DAPI计数的1.7%和3.8%。本研究设计的探针可有效用于复杂环境样品中博德特氏菌的定性与定最检测,

英文摘要:

Novel 16S-rRNA targeted oligonucleotide probes (FW iso 62 and FW iso 761) were designed to detect Bordetella sp. by fluorescence in situ hybridization (FISH). Strong fluorescence signals with the probes were observed in 20% - 60% formamide concentrations. Quantification of Bordetella sp. in soil was developed with the selected probe of FW iso 62 and its competitor combined with Nycodenz and DAPI technique. The advantages of the established DAPI- FISH : eliminate autofluorescence of soil particles masking the bacterial signals; ensure a large amount of bacteria in one picture for reliable statistical analysis ; and keep efficiently in situ information of the bacteria. 1,2,4-trichlorobenzene de- grading Bordetella bacteria were investigated in soils with the established method. The Bordetella bacterium was not detected in the agricultural soil, which was not exposed to chlorobenzenes. On the contrary, a lot of Bordetella bacteria (3.78 × 10^6 cell g^-1) were determined in the soil contaminated with chlorobenzenes. When the 1,2,4-TCB-degrading Bordetella strain and its community in the contaminated soil were re-inoculated into the agricultural soil, the Bordetella numbers increased and accounted for 1.7% and 3.8% of the DAPI counts after incubation for 1 month, respectively. The probes developed in this study are useful for detecting Bordetella bacteria in complicated environmental samples.

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期刊信息
  • 《土壤学报》
  • 北大核心期刊(2011版)
  • 主管单位:中国科学院
  • 主办单位:中国土壤学会
  • 主编:史学正
  • 地址:南京市北京东路71号
  • 邮编:210008
  • 邮箱:actapedo@issas.ac.cn
  • 电话:025-86881237
  • 国际标准刊号:ISSN:0564-3929
  • 国内统一刊号:ISSN:32-1119/P
  • 邮发代号:2-560
  • 获奖情况:
  • 2003年荣获“百种中国杰出学术期刊”称号,2002年荣获“第三届华东地区优秀期刊奖”,2002年荣获“第三届中国科协优秀期刊二等奖”
  • 国内外数据库收录:
  • 美国化学文摘(网络版),英国农业与生物科学研究中心文摘,日本日本科学技术振兴机构数据库,中国中国科技核心期刊,中国北大核心期刊(2004版),中国北大核心期刊(2008版),中国北大核心期刊(2011版),中国北大核心期刊(2014版),中国北大核心期刊(2000版)
  • 被引量:40223