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基于rDNAITS序列对绒泡菌目黏菌系统发育的探讨
  • ISSN号:1672-6472
  • 期刊名称:《菌物学报》
  • 时间:0
  • 分类:Q93[生物学—微生物学]
  • 作者机构:[1]南京师范大学生命科学学院,江苏南京210023
  • 相关基金:国家自然科学基金(31170014);江苏省高校自然科学研究重大项目(12KJAl80004)
中文摘要:

绒泡菌目Physarida是黏菌纲Myxogastria最大的一个目,对其系统发育关系的研究一直是根据形态特征。为了从分子水平探讨绒泡菌目乃至黏菌纲的系统发育关系,以黏菌rDNAITS通用引物对绒泡菌目5属8种黏菌的rDNAITS进行扩增和测序,结合GenBank中已有的黏菌rDNAITS序列,利用贝叶斯推断法(Bayesianinference,BI)和最大似然法(Maximumlikelihood,ML)构建系统发育树。结果表明:绒泡菌目不同物种的rDNAITS区在碱基组成和长度上差异明显,长度为777-1445bp,G+Cmol%在53.4%-61.9%之间。绒泡菌目与发网菌目Stemonitida聚类为两个明显的分支,在绒泡菌目分支上,绒泡菌科Physaraceae和钙皮菌科Didymiaceae各聚为一支,支持了形态学上以孢丝是否具有石灰质为依据区分这两个科的观点。由多份不同地理来源的鳞钙皮菌Didymiumsquamulosum材料组成的钙皮菌科又形成3个分支,证实了这个形态种是由地域来源广泛、繁殖亲和性各异和遗传变异较大的不同生物种组成的复合体。

英文摘要:

Physarida is the biggest order in the class Myxogastria. The phylogenetic relationships in Physarida have been generally based on morphological characteristics. In order to study the phylogenetic relationships in Physarida and even in Myxogastria at the molecular level, the universal primers were used to amplify and sequence the rDNA ITS sequences from eight species representing five genera of the order Physarida. The obtained sequences were combined with known sequences in GenBank to construct a phylogenetic tree using both maximum likelihood (ML) and bayesian inference (BI) methods. The varieties for the rDNA ITS of different Physarida species were observed both on the base composition and length. The range of length are 777- 2 445bp, and G+C mol% are between 53.4% and 62.9%. Physarida and Stemonitida are clustered into two distinct branches. On the branch of Physarida, Physaraceae and Didymiaceae were divided into two separate branches. The results supported taxonomic viewpoint making a distinction between the two families, based on capillitium with or without calcareous granulesDidymium squamulosum samples from different geographic regions are composed of three branches, confirming that this morphospecies is consist of a biological species complex with different geographical origins, reproductive incompatibility and genetic variation

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期刊信息
  • 《菌物学报》
  • 北大核心期刊(2011版)
  • 主管单位:中国科学院
  • 主办单位:中国科学院微生物研究所 中国菌物学会
  • 主编:戴玉成
  • 地址:北京市朝阳区北辰西路1号院3号中国科学院微生物研究所B401
  • 邮编:100101
  • 邮箱:jwxt@im.ac.cn
  • 电话:010-64807521
  • 国际标准刊号:ISSN:1672-6472
  • 国内统一刊号:ISSN:11-5180/Q
  • 邮发代号:2-499
  • 获奖情况:
  • 国内外数据库收录:
  • 美国化学文摘(网络版),英国农业与生物科学研究中心文摘,波兰哥白尼索引,美国剑桥科学文摘,中国中国科技核心期刊,中国北大核心期刊(2008版),中国北大核心期刊(2011版),中国北大核心期刊(2014版)
  • 被引量:5637