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滑桃树不同器官伴生细菌多样性的分子特征
  • ISSN号:2096-2703
  • 期刊名称:《植物多样性:英文版》
  • 时间:0
  • 分类:Q936[生物学—微生物学] Q948.12[生物学—植物学]
  • 作者机构:[1]中国科学院昆明植物研究所,云南昆明650204, [2]中国科学院研究生院,北京100039
  • 相关基金:国家自然科学基金重点项目(30430020)和国家杰出青年基金项目(30325044)资助;
中文摘要:

应用不依赖于培养的16S rRNA基因技术,揭示滑桃树根皮、茎皮以及种子伴生细菌的种类多样性,为建立伴生细菌的宏基因组文库奠定基础。基于我们新近发表的植物伴生菌富集方法,建立富集和未富集样品的全长16S rRNA基因文库,随机挑取至少100个克隆进行酶切分型并测序,根据16S rDNA的部分序列推测其所属伴生菌的种类。结果表明,所检测的细菌克隆大部分属于γ-Proteobacteria,有少量来源于α-Proteobacteria或放线菌(Actinobacteria),也包括不可培养或分类地位不明确的细菌。经过富集,16S rRNA基因文库中细菌克隆的比例和序列多样性显著增加,根皮的伴生细菌种类最为丰富,其次是成熟种子和茎皮;幼嫩种子16S rDNA文库的细菌克隆比例较小(1.18%),说明幼嫩种子的伴生菌最少。

英文摘要:

The species diversity of bacteria living in association with plant tissues was detected from different organs of Trewia nudiflora L. by a 16S rRNA gene-based cultivation-independent method. The results will be crucial to construct an ideal metagenomic library of plant-associated bacteria. Microbes of cultured- and uncultured-origin were enriched by the method developed recently in our laboratory. Nearly full-length 16S rDNA libraries were constructed from enriched and non-enriched sample DNA. From each library, more than 100 positive clones were randomly picked from the plates and were used for restriction fragment length polymorphism (RFLP) and sequence analysis, to identify their putative close phylogenetic relatives. As revealed in this study, our 16S rDNA clone libraries were dominated by γ-Proteobacteria. Some clones fell into uncultured or unclassified bacteria. A few clones of the libraries were affiliated with α-Proteobacteria or Actinobacteria. The enriched samples showed a considerably enhanced proportion of bacterium-derived clones and a wider sequence diversity of those clones. Among the organs detected, root barks are possessed of the highest diversity of bacteria; stem barks and ripe seeds are of secondly diversity of bacteria. Only 1.18% of bacterium-derived clones were found in the 16S rDNA library from young seeds, which strongly indicated that very few bacteria colonized young seeds.

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期刊信息
  • 《植物多样性:英文版》
  • 北大核心期刊(2011版)
  • 主管单位:中国科学院
  • 主办单位:中国科学院昆明植物研究所 中国植物学会
  • 主编:李德铢
  • 地址:昆明市蓝黑路132号中科院昆明植物所内
  • 邮编:650201
  • 邮箱:BianJi@mail.kib.ac.cn
  • 电话:0871-5223032
  • 国际标准刊号:ISSN:2096-2703
  • 国内统一刊号:ISSN:53-1233/Q
  • 邮发代号:64-11
  • 获奖情况:
  • 国内外数据库收录:
  • 俄罗斯文摘杂志,美国化学文摘(网络版),英国农业与生物科学研究中心文摘,美国生物科学数据库,日本日本科学技术振兴机构数据库,中国中国科技核心期刊,中国北大核心期刊(2011版),中国北大核心期刊(2014版)
  • 被引量:0