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MeDIP-Seq检测大鼠不同状态雪旺细胞基因甲基化水平
  • ISSN号:0253-9896
  • 期刊名称:《天津医药》
  • 时间:0
  • 分类:R338.1[医药卫生—人体生理学;医药卫生—基础医学]
  • 作者机构:[1]天津医科大学总医院骨科,300052
  • 相关基金:国家自然科学基金重点资助项目(81330042);国家科技部中俄合作专项项目(2014DFR31210);国家自然科学基金国际合作与交流项目(81620108018);国家自然科学基金面上资助项目(81371957);天津市科委重点项目(14ZCZDSY00044,13RCGFSY19000)
中文摘要:

目的探寻大鼠正常态雪旺细胞(NSCs)和激活态雪旺细胞(ASCs)差异甲基化基因。方法成年Wistar大鼠结扎坐骨神经,饲养7d后分别从坐骨神经和臂丛神经提取ASCs和NSCs。S-100抗体免疫荧光染色鉴定细胞,CCK-8法测定细胞生长情况。甲基化免疫共沉淀测序(MeDIP-Seq)技术筛选出ASCs和NSCs的差异性甲基化区域;分析与轴突再生相关的差异甲基化基因在染色体的分布情况,并进行基因本体(GO)和信号通路(PATHWAY)分析。结果成功获得了高纯度的ASCs和NSCs,两者S-100均表达阳性。在相同培养条件下,ASCs生长速度更快。MeDIP-Seq共发现177176个差异性甲基化区域,其中位于启动子(≤1kb)内1097个、启动子(1~2kb)内1136个,CpG岛内567个。共获得214个与轴突再生相关的差异甲基化基因,与NSCs相比,ASCs高甲基化基因191个,低甲基化基因23个。这些基因位于各个染色体上,以12号染色体上最多(22个),M染色体最少(2个)。GO分析结果显示差异甲基化基因涉及了轴突生长、轴突形成、轴突延伸和轴突导向等过程;并且与MAPK、细胞黏附分子和Ras等信号通路有关。结论ASCs和NSCs的甲基化水平存在明显的差异,可能与轴突再生有关。

英文摘要:

Objective To explore the difference of DNA methylation levels between normal Schwann cells(NSCs)andactivated Schwann cells(ASCs)in rats.Methods The adult Wistar rats were received sciatic nerve ligation and fed for7days.The ASCs and NSCs were separated from ligated sciatic nerves and brachial plexus respectively.Immunocytochemicalstaining of S-100antibody was used to identify the cells.The growth condition of cells was detected by CCK-8method.Methylated DNA immunoprecipitation sequencing(MeDIP-Seq)was applied to filter the differentially methylated regions inASCs and NSCs.The distribution of differentially methylated genes related with axonal regeneration in chromosome wasanalyzed,and Gene ontology(GO)and PATHWAY analysis were also conducted.Results High purity of ASCs and NSCswere obtained successfully,which were both positive for S-100antibody.In the same culture condition,ASCs showed afaster proliferation than that of NSCs.A total of177176differentially methylated regions were found by MeDIP-Seq.Amongthem,1097were located in the promoter(≤1kb),1136in the promoter(1-2kb)and567on the CpG.After functionalannotation of differentially methylated genes,214differentially methylated genes related with axonal regeneration were foundin ASCs and NSCs.Compared with NSCs,191genes were up-regulated and23genes were down-regulated in ASCs.Thesegenes were located on different chromosomes,most of which on chromosome12(22genes)and the least on chromosomes M(2genes).GO analysis indicated that the differential methylated genes were involved in axon growth,axon formation,axonelongation and axon guidance.The MAPK,cell adhesion molecules,Ras signaling pathway may be related with thedifferential methylated genes.Conclusion The methylation levels between ASCs and NSCs are significantly different,which are probably related with axon regeneration.

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期刊信息
  • 《天津医药》
  • 中国科技核心期刊
  • 主管单位:天津市卫生和计划生育委员会
  • 主办单位:天津市医学科学技术信息研究所
  • 主编:王贺胜
  • 地址:天津市和平区贵州路96号D座
  • 邮编:300070
  • 邮箱:tjyybjb@sina.com
  • 电话:022-23337519
  • 国际标准刊号:ISSN:0253-9896
  • 国内统一刊号:ISSN:12-1116/R
  • 邮发代号:6-3
  • 获奖情况:
  • 两年荣获天津市一级期刊、优秀期刊奖,首届、第四、五、六届华北地区优秀期刊奖,第二、三届华北地区十佳期刊奖,第一、二届北方优秀期刊奖,国家科技期刊方阵双百期刊,全国优秀期刊奖
  • 国内外数据库收录:
  • 俄罗斯文摘杂志,美国化学文摘(网络版),英国农业与生物科学研究中心文摘,波兰哥白尼索引,日本日本科学技术振兴机构数据库,中国中国科技核心期刊,中国北大核心期刊(2004版),中国北大核心期刊(2008版),中国北大核心期刊(2011版),中国北大核心期刊(2000版)
  • 被引量:21279