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hsa-miR-197靶基因预测及生物信息学特征分析
  • ISSN号:0253-3685
  • 期刊名称:江苏医药
  • 时间:2014.2.28
  • 页码:398-401
  • 分类:R346[医药卫生—基础医学]
  • 作者机构:[1]南京医科大学第二附属医院东院妇产科,江苏省210003, [2]南京医科大学附属南京市妇幼保健院妇科
  • 相关基金:国家自然科学基金青年科学基金(81202042)
  • 相关项目:应用宫内孕激素上调miR-197、影响子宫肌瘤细胞增殖与凋亡功能的机制研究
中文摘要:

目的通过对hsa-miR-197进行系统的生物信息学分析,预测其靶基因、相关功能及其可能参与的生物学过程。方法通过PubMed检索hsa-miR-197相关文献;通过miRBase、NCBI等在线数据库获取并分析hsa-miR-197序列保守性及其基因组特征。通过CA)功能注释、GO富集分析和信号转导通路富集分析,选择miRanda、TargetScan及PicTar预测hsa-miR-197的靶基因的交集作为分析的基因集合。结果(1)hsa-miR-197在人类同源的物种间具有高度保守性。(2)三种方法预测结果取交集获得hsa-miR-197可能的靶基因共有32个。(3)hsa-miR-197靶基因主要参与DNA修复、蛋白磷酸化、离子转运、蛋白修饰、DNA依赖的转录调控等生物学过程,涉及Wnt、氨基糖类代谢等信号转导通路。结论hsa-miR-197的功能较广泛,与发育、代谢等密切相关。

英文摘要:

Objective To predict the targets,functions and biological process of hsa-miR-197 by bioinformatics analysis. Methods The hsa-miR-197-related data were searched by PubMed. The sequence and genome characteristics of hsa-miR-197 were analyzed on line by miRBase database and NCBI. miRanda, TargetScan and PicTar algorithm were used to predict the target genes of hsa-miR-197. The intersection of the three results as gene set was analyzed by GO annotation, GO overrepresentation (Gene Ontology) and pathway analysis. Results The hsa-miR-197 was highly conserved among the species of the human homolog. By searching for the literatures and finding the common target genes from miranda, TargetScan and PicTar, 32 predicted targets were obtained. GO analysis showed that the target genes of hsa-miR-197 might participate in the biological processes of DNA repair, protein phosphorylation, ion transport, protein binding, and regulation of transcription, DNA-dependent. The pathway analysis showed that these target genes were mainly involved in Wnt, aminosugars metabolism. Conclusion The target genes of hsa-miR-197 may have extensive functions and be closely related to the development, metabolism and etc.

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期刊信息
  • 《江苏医药》
  • 北大核心期刊(2011版)
  • 主管单位:江苏省卫生厅
  • 主办单位:江苏省人民医院
  • 主编:
  • 地址:南京市广州路300号
  • 邮编:210029
  • 邮箱:yiya@chinajournal.net.cn
  • 电话:025-57711507 83216587
  • 国际标准刊号:ISSN:0253-3685
  • 国内统一刊号:ISSN:32-1221/R
  • 邮发代号:28-4
  • 获奖情况:
  • 中国科技论文统计源期刊,全国临床医学核心期刊
  • 国内外数据库收录:
  • 美国化学文摘(网络版),日本日本科学技术振兴机构数据库,中国中国科技核心期刊,中国北大核心期刊(2004版),中国北大核心期刊(2008版),中国北大核心期刊(2011版),中国北大核心期刊(2000版)
  • 被引量:32760