从高油抗青枯病花生新品系"06-4104"构建的5个cDNA文库获得了63207条EST,经序列拼接,获得14547条Uni-EST。经MISA检索,在这些Uni-EST中共检测出2643个SSR位点,分布于2250条EST中,发生频率为15.5%,平均每3.1kbEST序列含有一个SSR位点。其中,三核苷酸重复类型出现频率最高,占SSR总数的49.1%,其次是二核苷酸重复类型,占SSR总数的45.8%。在发现的46类重复基序中,AG/TC重复基序的频率最高,AAG/TTC次之。利用Primer3从含有SSR的2250条EST中共设计引物100对,利用这些引物检测花生栽培品种的多态性。结果表明,在所设计的100对引物中有91对在供试的6个花生栽培品种中得到有效扩增,其中13对得到了多态性的扩增产物,每对引物检测出的等位基因数2~3个,平均2.2个。
A total of 63 207 ESTs were produced from 5 cDNA libraries of RNAs of 06-4104,a peanut(Arachis hypogaea L.) line with high oil content and resistance to bacterial wilt.A total of 2 643 SSRs were identified,distributed in 2 250 ESTs.On average,one SSR was contained in 3.1 kb EST sequence with tri-nucleotide motifs(49.1%) as the most abundant motif types followed by di-nucleotide motifs(45.8%).AG/TC motifs' frequency is highest with AAG/TTC the next in 46 motifs found.Based on the 2 250 SSR-EST,100 primer pairs were designed and synthesized to test the polymorphisms of in 6 peanut cultivars.The results showed that 91 primer pairs could be amplified effectively in the peanut cultivars,13 primer pairs of which exhibited polymorphisms with 2~3 alleles,an average of 2.2 alleles each.