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利用SCoT分析柳枝稷遗传资源的多样性
  • ISSN号:1672-1810
  • 期刊名称:植物遗传资源学报
  • 时间:2014
  • 页码:89-95
  • 分类:S718.54[农业科学—林学]
  • 作者机构:[1]四川农业大学草业科学系,雅安625014
  • 相关基金:基金项目:国家自然基金(31201845);科技部“十二五”“863”计划(2012AA101801-02);四川农业大学大学生创新计划(121062603)
  • 相关项目:柳枝稷关键木质素合成酶基因定位、SNPs检测及关联作图
中文摘要:

本研究利用SCoT标记对96份柳枝稷种质的亲缘关系和遗传变异进行了研究。筛选出20条引物对96份供试材料进行PCR扩增,共获得445条带,其中多态性条带402条,平均多态性条带比率(PPB)达90.31%,多态性信息含量(PIC)为0.166~0.410,平均值为0.332,标记指数(MI)为10.20。遗传相似系数(GS)为0.498~0.912,平均值为0.688。表明SCoT标记能够揭示柳枝稷种质间的遗传变异。通过UPGMA分析表明,96份种质资源聚为高地型和低地型两大类。经POPGENE1.32软件分析结果显示:96份柳枝稷基因多样性指数(H)为0.285,Shannon指数(I)为0.431,表明供试的种质间遗传多样性丰富,遗传多样性水平高。经AMOVA1.55方差分析揭示:96份柳枝稷生态型内的遗传变异占总变异的72.85%,生态型间遗传变异占总变异的27.15%,结果表明ScoT可用于柳枝稷遗传多样性研究,该研究结果可为柳枝稷种质资源的进一步开发利用提供重要信息。

英文摘要:

The genetic variation and relationship of 96 switchgrass germplasms were analyzed by SCoT molecu- lar markers. 20 SCoT primer pairs were used to amplify SCoT fragments for 96 switchgrass germplasms. The primers generated a total of 445 bands among which 402 bands were found to be polymorphie, with an average of 90. 31%. The value of locus polymorphism information contents (PIC) ranged from 0. 166 to 0. 410, with an average of 0. 332. Marker index was 10.20. The genetic similarity coefficient among the germplasms ranged from 0. 498 to 0. 912, and the average content was 0. 688 ,indicating that the genetic variation could be revealed using SCoT markers. 96 switehgrass germplasms were clustered into upland and lowland groups by the cluster analysis. The results of POPGENE version 1.32 analysis showed that the genetic diversity index(H) and Shannon index (I) was 0. 285 and O. 431, respectively which indicating that there was comparatively great genetic diversity and high genetic variation among the switchgrass germplasms. Analysis of molecular variance (AMOVA 1.55 ) indicated that 72.85% of total variability came within populations level,while 27.15% came among populations level. The results indicated that SCoT markers were feasible and effective to analyze the genetic diversity of switchgrass and the results would facilitate the exploitation and utilization of switchgrass germplasms.

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期刊信息
  • 《植物遗传资源学报》
  • 北大核心期刊(2011版)
  • 主管单位:中华人民共和国农业部
  • 主办单位:中国农业科学院作物科学研究所 中国农学会
  • 主编:刘旭
  • 地址:北京中关村南大街12号
  • 邮编:100081
  • 邮箱:zwyczyxb2003@163.com/sina.com/caas.cn
  • 电话:010-82105794 82105795
  • 国际标准刊号:ISSN:1672-1810
  • 国内统一刊号:ISSN:11-4996/S
  • 邮发代号:82-643
  • 获奖情况:
  • 国内外数据库收录:
  • 美国化学文摘(网络版),中国中国科技核心期刊,中国北大核心期刊(2008版),中国北大核心期刊(2011版),中国北大核心期刊(2014版)
  • 被引量:10278