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大肠杆菌甲基转移酶dcm基因的表达对变铅青链霉菌的多效性影响
  • ISSN号:0253-2654
  • 期刊名称:微生物学通报
  • 时间:2014.9.20
  • 页码:1925-1931
  • 分类:Q946.885[生物学—植物学] O643.32[理学—物理化学;理学—化学]
  • 作者机构:[1]State Key Laboratory of Microbial Metabolism and School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200030, China, [2]School of Biology and Pharmaceutical Engineering, Wuhan Polytechnic University, Wuhan 430023, China, [3]Department of Biological Sciences, California State University, Los Angeles, CA 90032, USA
  • 相关基金:supported by the National Natural Science Foundation of China (31170083);the Ministry of Science and Technology (2012CB721004);the Shanghai Municipal Council of Science and Technology
  • 相关项目:天蓝色链霉菌中DNA甲基化依赖型限制系统的发现与表征
中文摘要:

5-Hydroxymethylcytosine (5hmC )T 甚至是在场的在里面噬菌体和哺乳动物的 DNA。在噬菌体的 5hmC 被 deoxycytidylate hydroxymethylase (CH ) 被 cytosine 底的 hydroxymethylation 在 deoxycytidylate (dCMP ) 形成,它把溶剂水用作氢氧根组施主。由对比, 5hmC 被 5-methylcytosine (5mC ) 的氧化在哺乳动物接合子形成。5hmC 也是在 nucleoside 抗菌素 mildiomycin 的现在,它的形成被 cytidylate hydroxymethylase MilA 管理。然而,催化机制仍然保持未知。在现在的学习,我们净化了他的标注 MilA 并且喂它的在里面有 H2 18O 的 vitro 反应。产品的最小公倍数分析表明 18O 被合并到 hydroxymethylated CMP (HmCMP ) ,和 18O 标签 HmCMP 的第二等的 MS 结果显示 18O 被合并到 HmCMP 的 cytosine。结果证明 MilA 把溶剂水用作象 CH 一样的氢氧根组施主。而且, MilA 的 Thr102 作为潜在的批评氨基酸抛锚被预言为 hydroxylation 的水的一个分子。最后,在微生物引起的染色体的组织上的上下文比较表明原来作为通常认为的 thymidylate synthase (TS ) 注解的六相应 ORF 是更可能的是 CMP hydroxymethylase。

英文摘要:

5-Hydroxymethylcytosine (5hmC) was present in T-even phage and mammalian DNA. 5hmC in phage is formed by hydroxymethylation of the cytosine base in deoxycytidylate (dCMP) by deoxycytidylate hydroxymethylase (CH), which uses the solvent water as the hydroxyl group donor. By contrast, 5hmC is formed in mammal zygotes by the oxidation of 5-methylcytosine (5mC). 5hmC was also present in a nucleoside antibiotic mildiomycin and its formation is governed by a cytidylate hydroxymethylase MilA. However, the catalytic mechanism remains unknown. In the present study, we purified His-tagged MilA and fed its in vitro reaction with H2^18O. The LC-MS analysis of the product revealed that ^18O was incorporated into the hydroxymethylated CMP (HmCMP), and the secondary MS result of ^18O-labeled HmCMP indicated that ^18O was incorporated into the cytosine of HmCMP. The results demonstrate that MilA uses solvent water as the hydroxyl group donor like CH. Moreover, Thr102 of MilA was predicted as potential critical amino acid anchoring one molecule of water for hydroxylation. Finally, organizational context comparison in microbial genomes reveals that six homologous ORFs originally annotated as putative thymidylate synthase (TS) are more likely to be CMP hydroxymethylase.

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期刊信息
  • 《微生物学通报》
  • 中国科技核心期刊
  • 主管单位:中国科学院
  • 主办单位:中国科学院微生物研究所 中国微生物学会
  • 主编:赫荣乔
  • 地址:北京市朝阳区北辰西路一号院3号中国科学院微生物研究所内B401室
  • 邮编:100101
  • 邮箱:xuj@sun.im.ac.cn
  • 电话:010-64807511
  • 国际标准刊号:ISSN:0253-2654
  • 国内统一刊号:ISSN:11-1996/Q
  • 邮发代号:2-817
  • 获奖情况:
  • 1992年中国科学技术协会优秀学术期刊三等奖,1992年国家科委中共中央宣传部新闻出版署“全国优...,2000年中国科学院优秀期刊三等奖,中国期刊方阵“双效”期刊
  • 国内外数据库收录:
  • 美国化学文摘(网络版),波兰哥白尼索引,美国剑桥科学文摘,中国中国科技核心期刊,中国北大核心期刊(2004版),中国北大核心期刊(2008版),中国北大核心期刊(2011版),中国北大核心期刊(2014版),中国北大核心期刊(2000版)
  • 被引量:29487