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胰腺癌相关基因寡核苷酸芯片的制备和初步应用
  • ISSN号:0529-5815
  • 期刊名称:《中华外科杂志》
  • 时间:0
  • 分类:R394.8[医药卫生—医学遗传学;医药卫生—基础医学]
  • 作者机构:[1]东南大学附属中大医院普外科,南京210009, [2]深圳市第六人民医院急诊外科
  • 相关基金:国家自然科学基金资助项目(30500491)
中文摘要:

目的探讨胰腺癌相关基因寡核苷酸芯片的构建,初步验证其在检测胰腺癌基因表达谱方面的应用。方法有目的地筛选胰腺癌相关基因,采用合成后点样的方法,制成寡核苷酸基因芯片。TRIzol法抽提组织总RNA,在cDNA第一链合成过程中,通过反转录酶将CyDye标记核苷酸直接掺入到eDNA中制备荧光探针,其中用Cy3-dCTP标记胰腺癌组织,cy5-dCTP标记正常胰腺组织。将荧光标记探针与芯片杂交16—18h。用Agilent扫描仪进行扫描,Imagene3.0软件进行图像分析,计算两种荧光Cy3与cy5信号强度的比值。挑选差异基因CDC25B和TUSC3进行荧光定量PCR(Sybrgreen方法)验证,PCR产物的定量方法采用比较Ct法。结果芯片杂交扫描图像信号清晰,具有较低的整体背景和较高的信噪比,各阳性质控点信号均匀一致,阴性质控点和空白点信号低。与正常组织相比,胰腺癌组织中差异表达基因24条,占全部基因的25.5%,其中上调基因17条(18.1%),下调基因7条(7.4%)。荧光定量PCR验证,CDC25B和TUSC3基因在胰腺癌中的表达趋势与芯片实验的结果一致。结论本研究制备的胰腺癌相关基因芯片可同时、并行检测多种胰腺癌相关基因的表达改变,具有一定的特异性和敏感性。胰腺癌组织与正常胰腺组织相比,基因表达谱具有明显差异。

英文摘要:

Objective To investigate the construction of oligonucleotide mieroarray specialized for pancreatic adenocarcinoma-associated genes and its application. Methods Pancreatic cancer related genes were purposely selected, and oligenucleotide microarray was prepared by spotting oligonucleotide probes onto glass slides coated with APS-PDC. Total RNA were extracted from frozen tissues with TRIzol method according to the manufacturers protocol, and purified with QIAGEN Rneasy Kit. Labeled cDNA targets for hybridizations were synthesized by reverse transcription from control- and cancer-total RNA samples in the presence of CyS-dCTP and Cy3-dCTP, respectively. The labeled probes were hybridized with oligenucleotide microarray for 16 h to 18 h. Hybridized microarray was scanned by Agilent laser scanner, and the aquired image was analyzed by Imagene3. 0 software. The intensity ratio of Cy3 and Cy5 were calculated. To confirm the expression profiles of these genes, quantitative reverse transcription-PCR (QRT-PCR) was carried out with CDC25B and TUSC3 genes. The productd of PCR were quantitated by comparative Ct method. Results The signal of microarray hybridization was clear, and the images had a lower background and higher signalnoise ratio. The signal of positive control spots were uniform, and spots of negative control and blank signal were fairly low. In comparison with normal pancreas, 24 differential expressed genes were identified, which included 17 up-regnlated and 7 down-regulated genes. The results of QRT-PCR demonstrated that the expression of CDC25B and TUSC3 in pancreatic cancer wexe increased and decreased respectively, which consistent with microarray hybridization. Conclusions The oligonucleotide microarray specialized for pancreatic cancer are desirable for its specialty, flexibility and sensitivity, which can simultaneously and parallelly detect multiple pancreatic cancer-associated genes. In contrast to normal pancreatic tissues, the genes expression profile are different significantly in pancreatic canc

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期刊信息
  • 《中华外科杂志》
  • 中国科技核心期刊
  • 主管单位:中国科学技术协会
  • 主办单位:中华医学会
  • 主编:赵玉沛
  • 地址:北京市东四西大街42号
  • 邮编:100710
  • 邮箱:cmacjs@cma.org.cn
  • 电话:010-85158180
  • 国际标准刊号:ISSN:0529-5815
  • 国内统一刊号:ISSN:11-2139/R
  • 邮发代号:2-59
  • 获奖情况:
  • 1997年三部委评选第二届全国优秀科技期刊三等奖、...,1999年首届国家期刊奖、2002年第二届国家期刊奖,2000年获国家自然科学基金资助期刊
  • 国内外数据库收录:
  • 美国化学文摘(网络版),荷兰文摘与引文数据库,美国生物医学检索系统,日本日本科学技术振兴机构数据库,中国中国科技核心期刊,中国北大核心期刊(2004版),中国北大核心期刊(2008版),中国北大核心期刊(2011版),中国北大核心期刊(2014版),中国北大核心期刊(2000版)
  • 被引量:77672