淋巴细胞趋化因子(XCL1)是C族趋化因子的一员,可由CD8+T细胞、NK细胞、γδT细胞、肥大细胞等多种细胞产生,其趋化性主要作用于CD8+T细胞和NK细胞。根据猪的EST数据库中猪XCL1基因序列,设计引物采用RT—PCR的方法从猪胸腺中扩增猪XCL1全基因序列,将其连接到pMD-19T载体上并测序,得到猪XCLl基因(GenBank登录号为EU743945)。猪XCL1cDNA大小为333bp,编码由110个氨基酸残基组成的多肽。该多肽序列含Chemokine-C、Chemokine、Chemokine-CC和SCY等功能域,与羊和人的氨基酸序列相似率分别为81.6%和68.4%。预测分析其为分泌蛋白,信号肽剪切位点在21A和22V。猪XCL1基因定位于猪4号染色体(CU468871),基因结构与人XCL1的相似,都由3个外显子组成。该基因ORF翻译起始处基本符合Kozak规则,ORF起始密码子上游同一相位有终止密码子,ORF后有1个加尾信号,预测得到4个可能的启动子,可能性高达85%~98%。总之,通过电子克隆与试验验证,成功地克隆了猪新基因XCL1。
Chemokine (C motif) ligand 1(XCL1) is a small cytokine belonging to the C chemokine family that is also known as lymphotactin. XCL1 is produced by activated CD8(+) T cells, NK cells, gamma delta T cells and masl cells, and its chemotactic activity seems primarily controlling movement of CD8(+) T ceils and NK cells. This work reports the cloning and characterization of the porcine XCL1 cdNA. Porcine XCL1 cDNA was oblained by reverse transcription polymerase chain reaction (RT-PCR) from porcine thymus mRNA, using in silico cloning strategy based on pig dbEST. The complete open reading frame (ORF) of XCL1 contains 333 bp encoding a deduced 110 aa residues. The amino acid sequence of porcine XCL1 was characterized by Chemokine-C, Chemokine, Chemokine-CC and SCY domains. The putative porcine XCL1 protein shares a higher level of homology with its sheep (81.6% amino acid identity) than with its human (68.4% amino acid identity) counterpart, and is predicted as a secreted protein, with the most likely cleavage site between 21A and 22V of the N-terminus. The gene is composed of three exons, the general structure being observed to be similar to that of the human XCL1 gene. The gene was mapped to chromosome 4 (CU468871). The porcine XCL1 gene has 4 putative promoters with possibility of 85%- 98%, a stop codon in the upstream of ORF , one Poly-A signal in the downstream of ORF, and basically accords with Kozak rule around the translation start of the ORF. In conclusion, by combining bioinformatits analyses with experimental verification, a novel porcine gene XCL1 was successfully cloned, and verified by a series of theoretical and experimental evidences.