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人天然免疫基因BCL10的猪同源物的识别、克隆与初步表达分析
  • ISSN号:0253-9772
  • 期刊名称:《遗传》
  • 时间:0
  • 分类:S852.42[农业科学—基础兽医学;农业科学—兽医学;农业科学—畜牧兽医]
  • 作者机构:[1]西北农林科技大学动物医学院,陕西杨陵712100
  • 相关基金:西北农林科技大学引进人才基金项目(01140406);国家自然科学基金项目(30270342)
中文摘要:

淋巴细胞趋化因子(XCL1)是C族趋化因子的一员,可由CD8+T细胞、NK细胞、γδT细胞、肥大细胞等多种细胞产生,其趋化性主要作用于CD8+T细胞和NK细胞。根据猪的EST数据库中猪XCL1基因序列,设计引物采用RT—PCR的方法从猪胸腺中扩增猪XCL1全基因序列,将其连接到pMD-19T载体上并测序,得到猪XCLl基因(GenBank登录号为EU743945)。猪XCL1cDNA大小为333bp,编码由110个氨基酸残基组成的多肽。该多肽序列含Chemokine-C、Chemokine、Chemokine-CC和SCY等功能域,与羊和人的氨基酸序列相似率分别为81.6%和68.4%。预测分析其为分泌蛋白,信号肽剪切位点在21A和22V。猪XCL1基因定位于猪4号染色体(CU468871),基因结构与人XCL1的相似,都由3个外显子组成。该基因ORF翻译起始处基本符合Kozak规则,ORF起始密码子上游同一相位有终止密码子,ORF后有1个加尾信号,预测得到4个可能的启动子,可能性高达85%~98%。总之,通过电子克隆与试验验证,成功地克隆了猪新基因XCL1。

英文摘要:

Chemokine (C motif) ligand 1(XCL1) is a small cytokine belonging to the C chemokine family that is also known as lymphotactin. XCL1 is produced by activated CD8(+) T cells, NK cells, gamma delta T cells and masl cells, and its chemotactic activity seems primarily controlling movement of CD8(+) T ceils and NK cells. This work reports the cloning and characterization of the porcine XCL1 cdNA. Porcine XCL1 cDNA was oblained by reverse transcription polymerase chain reaction (RT-PCR) from porcine thymus mRNA, using in silico cloning strategy based on pig dbEST. The complete open reading frame (ORF) of XCL1 contains 333 bp encoding a deduced 110 aa residues. The amino acid sequence of porcine XCL1 was characterized by Chemokine-C, Chemokine, Chemokine-CC and SCY domains. The putative porcine XCL1 protein shares a higher level of homology with its sheep (81.6% amino acid identity) than with its human (68.4% amino acid identity) counterpart, and is predicted as a secreted protein, with the most likely cleavage site between 21A and 22V of the N-terminus. The gene is composed of three exons, the general structure being observed to be similar to that of the human XCL1 gene. The gene was mapped to chromosome 4 (CU468871). The porcine XCL1 gene has 4 putative promoters with possibility of 85%- 98%, a stop codon in the upstream of ORF , one Poly-A signal in the downstream of ORF, and basically accords with Kozak rule around the translation start of the ORF. In conclusion, by combining bioinformatits analyses with experimental verification, a novel porcine gene XCL1 was successfully cloned, and verified by a series of theoretical and experimental evidences.

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期刊信息
  • 《遗传》
  • 中国科技核心期刊
  • 主管单位:中国科学院
  • 主办单位:中国遗传学会
  • 主编:张永清
  • 地址:北京朝阳区北辰西路1号院中国科学院遗传发育所
  • 邮编:100101
  • 邮箱:yczz@genetics.ac.cn
  • 电话:010-64807669
  • 国际标准刊号:ISSN:0253-9772
  • 国内统一刊号:ISSN:11-1913/R
  • 邮发代号:2-810
  • 获奖情况:
  • 中国自然科学核心期刊,《CAJ-CD》执行优秀奖,2008年12月获“中国精品科技期刊”证书和北京市印...
  • 国内外数据库收录:
  • 美国化学文摘(网络版),英国农业与生物科学研究中心文摘,荷兰文摘与引文数据库,美国生物医学检索系统,美国生物科学数据库,日本日本科学技术振兴机构数据库,中国中国科技核心期刊,中国北大核心期刊(2004版),中国北大核心期刊(2008版),中国北大核心期刊(2011版),中国北大核心期刊(2014版),中国北大核心期刊(2000版)
  • 被引量:23270