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乳腺癌转移相关microRNA-200c调控的基因网络分析
  • ISSN号:1000-7431
  • 期刊名称:肿瘤
  • 时间:2013
  • 页码:111-118
  • 分类:R737.9[医药卫生—肿瘤;医药卫生—临床医学]
  • 作者机构:[1]南昌大学基础医学院生物化学与分子生物学教研室,江西南昌330006, [2]南昌大学附属感染医院病理科,江西南昌330002, [3]南昌大学基础医学院病理教研室,江西南昌330006, [4]美国佐治亚医科大学生物化学与分子生物学系,美国奥古斯塔30912
  • 相关基金:1.国家自然科学基金资助项目(编号:30860319:81160248)2.江西省教育厅科技计划资助项目(编号:GJJ08051)
  • 相关项目:mir200c表观修饰与肿瘤转移的关系
中文摘要:

目的:结合生物信息学分析手段,筛选乳腺癌转移相关微RNA(microRNA,miRNA)-200c调控的基因网络。方法:采用Affymetrix miRNA生物芯片分析12株乳腺细胞中差异表达的miRNA;应用脂质体转染法将miR-200c模拟物(mimic)转入4株高转移性的乳腺癌细胞株(BT549、HS578T、MDA-MB-231和SUMl59PT)中,再用Affymetrix mRNA生物芯片检测转染miR-200cmimic后高转移性乳腺癌细胞株中差异表达的基因。采用生物分子功能注释系统(CapitalBio Molecule Annotation System,MAS),筛选miR-200c调控的信号通路与基因网络。结果:12个乳腺细胞株中筛选出9个差异表达的miRNA(P〈0.01,倍数值≥20或≤-20),其中以miR-200c在高转移性乳腺癌细胞株中下调幅度最显著。4个转染miR-200cmimic的乳腺癌细胞株中共有33个共上调基因及13个共下调基因。实时荧光定量-PCR与蛋白质印迹法验证结果显示,共调基因锌指E框结合同源框1(zincfinger E-box binding homeobox1,ZEB1)mRNA和蛋白在4个转染细胞株中均下调。MAS生物信息学分析结果显示,转染miR-200cmimic的乳腺癌细胞株中共有的差异表达基因相关信号通路包括嗅觉传导(olfactory transduction)通路、细胞因子-细胞因子受体关联(cytokine-cytokine receptor interaction)通路和细胞黏附分子(cell adhesion mo1ecules,CAMs)通路等,不同的信号通路可以通过共调基因相互联系,在特定的信号通路中,共调基因间也存在密切的相互联系。结论:以高通量生物芯片检测为基础,运用生物信息学分析手段,多元化筛选获得miR-200c调控的基因网络,为后续展开miR-200c作用机制的研究提供了明确的方向。

英文摘要:

Objective: To screen for the gene network regulated by breast cancer metastasis-related miR- 200c (microRNA-200c) using bioinformatics means. Hethods: The miRNAs differentially expressed in 12 types of breast cell lines were screened out using Affymetrix miRNA Array. Lipofectamine was supplied in the transfection of miR-200c mimic into four breast cancer cell lines with high-metastatic capability (BT549, HS578T, MDA-MB-231 and SUM159PT cells). The genes differentially expressed in these four breast cancer cell lines were screened through mRNA expression profiling. The signalling pathways and the gene network regulated by miR-200c were screened using MAS (Molecule Annotation System) (CapitalBio Molecule Annotation System). Results: Nine miRNAs were differentially expressed among 12 types of breast cell lines (P 〈 0.01, fold change ≥20 or ≤-20), and the expression of miR-200c was decreased most significantlyin breast cancer cell lines of high metastatic potential. There were 33 co-upregulated genes and 13 co- downregulated genes shared through the four breast cancer cell lines of high metastatic potential after transfection with miR-200c mimic. The results of real-time fluorescence quantitative PCR and Western blotting confirmed that the expressions of ZEB1 (zinc finger E-box binding homeobox 1) mRNA and protein were decreased in four transfected cell lines. The bioinformatics analysis using MAS suggested that the common signalling pathways related to the genes differentially expressed in breast cancer cells transfected with miR-200c mimic included pathways olfactory transduction, cytokine-cytokine receptor interaction, cell adhesion molecules, etc. The different signalling pathways could be in interconnection with each other through co-regulated genes, and co-regulated genes had a close interrelationship within a specific pathway. Conclusion: Based on high-throughput screening using Biochip technology, the bioinformatics analysis is able to demonstrate the gene network regula

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期刊信息
  • 《肿瘤》
  • 北大核心期刊(2011版)
  • 主管单位:教育部
  • 主办单位:上海市肿瘤研究所
  • 主编:高玉堂
  • 地址:上海斜土路2200弄25号
  • 邮编:200032
  • 邮箱:tumorsci@yahoo.com.cn
  • 电话:021-64436792
  • 国际标准刊号:ISSN:1000-7431
  • 国内统一刊号:ISSN:31-1372/R
  • 邮发代号:4-289
  • 获奖情况:
  • 中文核心期刊,中国科技论文统计源核心期刊
  • 国内外数据库收录:
  • 美国化学文摘(网络版),英国农业与生物科学研究中心文摘,波兰哥白尼索引,荷兰文摘与引文数据库,荷兰医学文摘,美国剑桥科学文摘,日本日本科学技术振兴机构数据库,中国中国科技核心期刊,中国北大核心期刊(2004版),中国北大核心期刊(2008版),中国北大核心期刊(2011版),中国北大核心期刊(2014版),瑞典开放获取期刊指南,中国北大核心期刊(2000版)
  • 被引量:19202