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华支睾吸虫糖基转移酶基因全长序列的克隆和生物信息学分析
  • ISSN号:1673-5234
  • 期刊名称:中国病原生物学杂志
  • 时间:2012
  • 页码:172-176
  • 分类:R383.22[医药卫生—医学寄生虫学;医药卫生—基础医学]
  • 作者机构:[1]中山大学基础医学院寄生虫学教研室,广东广州510080
  • 相关基金:国家973计划项目(No.2010CB530000)
  • 相关项目:肝吸虫幼虫鱼体内囊蚴形成的分子机制及干预研究
中文摘要:

目的分析和预测华支睾吸虫囊蚴全长cDNA质粒文库中编号为cs091c06的糖基转移酶基因EST序列结构和功能特征及其编码蛋白的理化性质,预测该基因的生物学意义和应用前景。方法利用NCBI网站和ExPaSy等生物信息学在线分析工具和Vector NTI suite等软件包,分析华支睾吸虫囊蚴全长cDNA质粒文库中cs091c06的EST序列及编码蛋白的理化性质、结构与功能特征。结果 BLASTx工具分析该EST序列是糖基转移酶的同源基因,序列全长为1 402bp,其完整的编码框为37~1 011bp,编码325个氨基酸。Target P和Signal P软件预测该编码氨基酸前30个氨基酸是分泌信号肽,蛋白的理化性质较稳定。蛋白质一级结构扫描发现两个糖基转移酶的保守功能区分别位于67~178aa和69~253aa,且在该基因的N端发现明显的蛋白质糖基化位点,分别位于76~79aa和190~193aa。在该基因的氨基酸序列中,共发现8个B细胞表位和6个T细胞表位。RT-PCR结果显示,该基因在华支睾吸虫成虫阶段高表达,囊蚴和虫卵阶段低表达。结论华支睾吸虫糖基转移酶基因与多个物种同源,编码蛋白可能是华支睾吸虫重要的虫体分泌排泄抗原成分;阶段特异性表达特征提示该基因很可能参与华支睾吸虫重要虫源蛋白糖基化过程,可作为华支睾吸虫病疫苗候选分子和药物靶标。

英文摘要:

Objectives To predict the structural and functional characteristics of cs091c06 glucosyltransferase from a full-length cDNA plasmid library for Clonorchis sinensis and to bioinformatically analyze the physical and chemical properties of the protein it codes for.A recombinant gene was constructed and the level of transcription was examined in different life stages of C.sinensis.The biological significance of the gene and its prospective use are discussed Methods Analytical tools provided by NCBI(http://www.ncbi.nlm.nih.gov/) and ExPaSy(http://www.expasy.org/) and bioinformatics software such as the Vector NTI suite were used to identify an EST clone(NO.cs091c06) from the full-length cDNA plasmid library for C.sinensis.Its coding regions were analyzed along with the physico-chemical properties and structural and functional characteristics of the protein it codes for.Results EST was predicted to be a homologue of glucosyltransferase with a complete sequence 1,402 bp in length.The complete coding region was 37-1011 bp in length and coded for 325 amino acids.The protein contained a secretory signal peptide of 30 amino acid residues at the N terminus with stable physico-chemical properties.The protein consisted of two spatially independent domains,with a conserved domain at(67-178) and(69-253).The gene had an apparent protein glycosyl site at the N terminus located at(76-79) and(190-193).The gene's amino acids included eight linear B-cell epitopes and six linear T-cell epitopes.RT-PCR indicated that the level of transcription was greater in adult worms and lower in metacercariae and eggs of C.sinensis.Conclusion C.sinensis glucosyltransferase is homologous with glucosyltransferase from other species and is probably an excretory-secretory antigenic component.Characteristics of stage-specific expression indicated that the gene is probably involved in the important process of glycosylation by C.sinensis and may be a promising candidate for vaccines and drugs targeting clonorchiasis.

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期刊信息
  • 《中国病原生物学杂志》
  • 中国科技核心期刊
  • 主管单位:中华人民共和国卫生和计划生育委员会
  • 主办单位:中华预防医学会 卫生部疾病控制司 山东省寄生虫病防治研究所
  • 主编:庄辉
  • 地址:山东省济宁市太白楼中路11号
  • 邮编:272033
  • 邮箱:www.cjpb.org
  • 电话:0537-2342934
  • 国际标准刊号:ISSN:1673-5234
  • 国内统一刊号:ISSN:11-5457/R
  • 邮发代号:24-81
  • 获奖情况:
  • 中华预防医学会、系列杂志优秀期刊,山东省优秀期刊
  • 国内外数据库收录:
  • 英国农业与生物科学研究中心文摘,中国中国科技核心期刊,中国北大核心期刊(2011版),中国北大核心期刊(2014版)
  • 被引量:8395