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Molecular Modeling of the Three-Dimensional Structure of Human Sphingomyelin Synthase
  • ISSN号:1001-604X
  • 期刊名称:《中国化学:英文版》
  • 时间:0
  • 分类:Q71[生物学—分子生物学] Q545[生物学—生物化学]
  • 作者机构:[1]School of Pharmacy, Fudan University, Shanghai 201203, China, [2]State Key Lab of Bioorganic Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, Shanghai 200032, China
  • 相关基金:Project supported by the National Natural Science Foundation of China (Nos.30973641, 20902013), a special research fund for the Doctoral Program of Higher Education from the Chinese Ministry of Education (No. 20090071110054) and an open grant from the State Key Laboratory of Bio-organic and Natural Products Chemistry, Chinese Academy of Sciences.
中文摘要:

鞘磷脂 synthase (SMS ) 从 ceramide 和 phosphatidylcholine 生产鞘磷脂和 diacylglycerol。它在房间起一个重要作用幸存和 apoptosis,发炎,和类脂化合物动态平衡,并且因此作为一篇小说在最近的年里被注意了潜在的药目标。在这研究,我们联合了相同建模,分子的停靠、分子的动力学模拟,和导出在有鞘磷脂的建筑群的人的鞘磷脂 synthase (hSMS1 ) 的三维的结构的正常模式分析。我们的模型在 hSMS1 的催化机制上提供合理解释。它能也关于 hSMS1 象一些另外的已知的试验性的结果一样向 phosphocholine 和鞘磷脂解释 hSMS1 的高选择。而且,我们也导出 D609 的一个复杂模型, hSMS1 的唯一的已知的小分子的禁止者到目前为止。我们的 hSMS1 模型可以用作 hSMS1 的更有效的小分子的禁止者的发现的一个合理结构的基础。

英文摘要:

Sphingomyelin synthase (SMS) produces sphingomyelin and diacylglycerol from ceramide and phosphatidyl- choline. It plays an important role in cell survival and apoptosis, inflammation, and lipid homeostasis, and therefore has been noticed in recent years as a novel potential drug target. In this study, we combined homology modeling, molecular docking, molecular dynamics simulation, and normal mode analysis to derive a three-dimensional struc- ture of human sphingomyelin synthase (hSMS 1) in complex with sphingomyelin. Our model provides a reasonable explanation on the catalytic mechanism of hSMS 1. It can also explain the high selectivity of hSMS 1 towards phos- phocholine and sphingomyelin as well as some other known experimental results about hSMS1. Moreover, we also derived a complex model of D609, the only known small-molecule inhibitor of hSMS 1 so far. Our hSMS 1 model may serve as a reasonable structural basis for the discovery of more effective small-molecule inhibitors of hSMS 1.

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期刊信息
  • 《中国化学:英文版》
  • 主管单位:
  • 主办单位:中国化学会
  • 主编:
  • 地址:上海市枫林路354号中科院上海有机化学研究所
  • 邮编:200032
  • 邮箱:
  • 电话:021-54925243
  • 国际标准刊号:ISSN:1001-604X
  • 国内统一刊号:ISSN:31-1547/O6
  • 邮发代号:4-646
  • 获奖情况:
  • 中国期刊方阵“双高”期刊
  • 国内外数据库收录:
  • 美国化学文摘(网络版),荷兰文摘与引文数据库,美国科学引文索引(扩展库),日本日本科学技术振兴机构数据库,英国英国皇家化学学会文摘
  • 被引量:175