以4个新疆野苹果株系为试材,利用CTAB法提取DNA,对影响SSR—PCR扩增结果的主要因子设计了多梯度的优化试验。结果表明:新疆野苹果SSR-PCR反应体系(25μL)中含ToqDNA聚合酶0-5U、模板DNA5.0ng、dNTPs0.2mmol/L、引物0.2μmol/L、Mg2+1.0mmol/L、退火温度为60%时效果最佳。最佳扩增程序为:94℃预变性2min,94℃变性30s,65℃退火1min,72~C~伸lmin,4个循环;94cc变性30s,6d℃退火1min,72℃延伸1min,30个循环;72%延伸5min,4℃保存。利用此反应体系对30份新疆野苹果进行SSR-PCR扩增和电泳检测,扩增谱带清晰且多态性较好,表明该体系适用于新疆野苹果的基因连锁图谱构建和QTL定位。
DNA of four Malus sieversii accessions were distilled by CTAB.An optimal experimental design was employed to evaluate five factors (template DNA,Mg2+,dNTPs, Taq DNA polymerase and primer) at five different concentrations.The results indicated that the optimal SSR-PCR reaction system of terminal volume 25 ILL consisted of 0.5 U Taq DNA polymerase,0.2 txmol/L primers,5 ng template DNA,0.2 retool/ L dNTP and 1.0 mmol/L Mg2~.The suitable amplification temperature profiles were as following:2 vain at 9422 for pre-denaturing, followed by 4 cycles of 30 s at 9422 for denaturing,1 rain at 6522 for anncaling,1 rain at 7222 for extending,then followed by 30 cycles of 30 s at 9422 for denaturing,1 min at 6022 for annealing,1 min at 7222 for extending, and finally kept the reaction mixture at 422 after a final extension step of 7222 for 5 min.Using the above optimal SSR-PCR reaction system,SSR fragments of 30 Malus sieversii accessions were obtained.The clear and abundant polymorphism indicated this reaction system was suitable for construction gene linkage map and QTL mapping.