位置:成果数据库 > 期刊 > 期刊详情页
玛珥湖好氧不产氧光合细菌pufM基因DNA和mRNA的定量及多样性分析
  • ISSN号:0253-2654
  • 期刊名称:微生物学通报
  • 时间:0
  • 页码:1560-1572
  • 分类:S967.3[农业科学—水产养殖;农业科学—水产科学]
  • 作者机构:[1]广东海洋大学水产学院广东省水产经济动物病原生物学及流行病学重点实验室广东湛江524025, [2]仲恺农业工程学院,广东广州510000
  • 相关基金:国家自然科学基金青年科学基金项目(No.30900045)
  • 相关项目:玛珥湖好氧不产氧光合细菌的分子生态学研究
中文摘要:

【目的】湖光岩玛珥湖是一类特殊的火山口湖,它完全封闭,地质年代久远,尚未受人类活动的剧烈影响,孕育着丰富而特殊的微生物种群。好氧不产氧光合细菌(AAPB)是以其在有氧情况下能行使光合功能而定义的一类专性异养细菌,其生理生态特征独特,进化年代久远,在水生生态系统的上层水体中广泛分布。目前,AAPB在玛珥湖水体中是否有分布仍是未知。【方法】构建和比较夏季湖水1m、5m、12m三个水层的总DNA和总RNA的AAPB光合中心合成的关键基因pufM的6个克隆文库,并结合定量PCR技术,分析了不同水层AAPB的分布、系统发育多样性及其在总细菌中的比重。【结果】6个文库覆盖率和稀释曲线显示样本初步揭示了各水层优势AAPB类群的多样性。BLAST核苷酸同源性介于80%-93%;多样性指数表明,湖光岩表层和底层多样性相当,中间层最低,总RNA的多样性高于总DNA。系统发育分析结果表明,OTU21-24所含的序列(占总序列的49.43%)与β-变形细菌的进化距离最接近,是湖光岩玛珥湖的优势AAPB菌群。定量PCR结果显示1m水层中AAPB在总细菌中的比重最高,可达38.06%;而5m水层中AAPB所占的比重最低,仅为0.85%:12m为9.54%。【结论】湖光岩玛珥湖孕育着丰富而多样的AAPB类群。

英文摘要:

[Objective] Maar lake is a special type of Crater Lake. Huguangyan Maar Lake was formed about 140 k-160 k years ago, fully closed, and has not yet been affected by human ac- tivities, where abundant and novel microbial species might dwell as reported previously. Aerobic anoxygenic phototrophic bacteria (AAPB) is a functional bacterial group with long evolution history in Earth possessing unique physiological and ecological characteristics. To date, our knowledge about AAPB distribution in Maar Lake is still blank. [Methods] Here, by constructing and analyzing six clone libraries of the photosynthetic reaction center pufM gene from total DNA and RNA, respectively, with 1 m, 5 m, and 12 m water layers in Huguangyan Maar Lake, and combining quantitative Real-time PCR, we studied AAPB's distribution, phy- logenetic diversity and the proportion in the total bacteria in different water layers. The results of coverage value and rarefaction curves of six libraries showed that AAPB diversity was sampled well for the purpose of revealing the diversity of main AAPB groups in each water layer. [Results] BLAST analysis showed that pufM sequences in Maar Lake were 80%-93% similar to public sequences. Diversity index indicated that the AAPB diversity in surface and deep layers was similar, whereas diversity in the intermediate layer was lowest. In view of to- tal RNA and DNA data, puJM RNA diversity was higher than that of DNA. Phylogenetic and statistical analysis revealed that 49.43% sequences are fell into the OTUs 21-24 which were closely related to [3-proteobacteria and represent dominated AAPB groups. Quantitative PCR results showed that the percentage of AAPB in total bacteria in 1 m water layer reached a highest value of 38.06%, whereas only 0.85% and 9.54% in 5 m and 12 m, respectively. [Conclusion] Huguangyan Maar Lake is occupied by rich and diverse AAPB groups.

同期刊论文项目
同项目期刊论文
期刊信息
  • 《微生物学通报》
  • 中国科技核心期刊
  • 主管单位:中国科学院
  • 主办单位:中国科学院微生物研究所 中国微生物学会
  • 主编:赫荣乔
  • 地址:北京市朝阳区北辰西路一号院3号中国科学院微生物研究所内B401室
  • 邮编:100101
  • 邮箱:xuj@sun.im.ac.cn
  • 电话:010-64807511
  • 国际标准刊号:ISSN:0253-2654
  • 国内统一刊号:ISSN:11-1996/Q
  • 邮发代号:2-817
  • 获奖情况:
  • 1992年中国科学技术协会优秀学术期刊三等奖,1992年国家科委中共中央宣传部新闻出版署“全国优...,2000年中国科学院优秀期刊三等奖,中国期刊方阵“双效”期刊
  • 国内外数据库收录:
  • 美国化学文摘(网络版),波兰哥白尼索引,美国剑桥科学文摘,中国中国科技核心期刊,中国北大核心期刊(2004版),中国北大核心期刊(2008版),中国北大核心期刊(2011版),中国北大核心期刊(2014版),中国北大核心期刊(2000版)
  • 被引量:29487