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Long Noncoding RNA Expression Signatures of Abdominal Aortic Aneurysm Revealed by Microarray
  • ISSN号:1673-8527
  • 期刊名称:《遗传学报:英文版》
  • 时间:0
  • 分类:R[医药卫生]
  • 作者机构:[1]The Department of Vascular Surgery, Beijing Anzhen Hospital, Capital Medical University, Beijing 100029, China, [2]State Key Laboratory of Brain and Cognitive Science, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China, [3]State Key Laboratory of Medical Moleeular Biology, Institute of Basic Medical Sciences Chinese Aeademy of Medical Sciences & School of Basic Medicine Peking Union Medical College, Beijing 100005, China
  • 相关基金:supported by the grants from National Natural Science Foundation of China(No.81100226,31300889,91439127,and 81570435)
中文摘要:

ObjectiveThis 学习针对在腹的大动脉的动脉瘤(AAA ) 的致病观察长 noncoding RNA (lncRNAs ) 的角色 AAA 纸巾和正常腹的大动脉的纸巾(NT ) 的 .MethodsLncRNA 和 mRNA 表示签名被 microarray 分析并且进一步由实时量的反向抄写的 PCR (qRT-PCR ) 验证了。指向关系的 lncRNAs-mRNAs 用计算分析被识别。5-lipoxygenase (ALOX5 ) 上的 lnc-ARG 的效果表示在 3,688 lncRNAs 的 HeLa cells.ResultsDifferential 表情被测试, 3,007 mRNAs 在 AAA 和 NT 纸巾之间被识别。而且, 1,284 差别表示了长 intergenic noncoding RNA, 206 差别表示了邻近编码蛋白质的基因的象提高一样 lncRNAs 被生物信息学分析认出。一些差别表示了在 AAA 之间的 lncRNAs 和 mRNAs,正常织物样品是进一步的使用 qRT-PCR 验证。编码和 noncoding 基因的一个合作表示网络基于在差别之间的关联分析被构造表示 lncRNAs 和 mRNAs。另外, lnc-ARG 定位了在以内 ALOX5 在上游被用计算分析分析编码蛋白质的潜力作为一个 noncoding 抄本排序。而且,我们在揭示新 lncRNA 候选人与 AAA 的致病有关的 HeLa cells.ConclusionThis 学习发现那 lnc-ARG 罐头减少 ALOX5 和反应的氧种类生产的 mRNA 水平。

英文摘要:

Objective This study is aimed at observing the role of long noncoding RNAs(lncR NAs) in the pathogenesis of abdominal aortic aneurysm(AAA).Methods Lnc RNA and m RNA expression signatures of AAA tissues and normal abdominal aortic tissues(NT) were analyzed by microarray and further verified by Real-time quantitative reverse-transcription PCR(q RT-PCR).The lnc RNAs-m RNAs targeting relationships were identified using computational analysis.The effect of lnc-ARG on 5-lipoxygenase(ALOX5) expression was tested in HeL a cells.Results Differential expressions of 3,688 lncR NAs and 3,007 m RNAs were identified between AAA and NT tissues.Moreover,1,284 differentially expressed long intergenic noncoding RNAs and 206 differentially expressed enhancer-like lnc RNAs adjacent to protein-coding genes were discerned by bioinformatics analysis.Some differentially expressed lncR NAs and m RNAs between AAA and normal tissue samples were further verified using q RT-PCR.A co-expression network of coding and noncoding genes was constructed based on the correlation analysis between the differentially expressed lnc RNAs and mR NAs.In addition,the lnc-ARG located within the upstream of ALOX5 was sorted as a noncoding transcript by analyzing the protein-coding potential using computational analysis.Furthermore,we found that lnc-ARG can decrease the m RNA level of ALOX5 and reactive oxygen species production in He La cells.Conclusion This study revealed new lnc RNA candidates are related to the pathogenesis of AAA.

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期刊信息
  • 《遗传学报:英文版》
  • 北大核心期刊(2004版)
  • 主管单位:中国科学院
  • 主办单位:中国科学院遗传与发育生物学研究所 中国遗传学会
  • 主编:薛勇彪
  • 地址:北京市安定门外大屯路中科院遗传发育所
  • 邮编:100101
  • 邮箱:ycxb@genetics.ac.cn
  • 电话:010-64807669
  • 国际标准刊号:ISSN:1673-8527
  • 国内统一刊号:ISSN:11-5450/R
  • 邮发代号:2-819
  • 获奖情况:
  • 1996年获中科院优秀期刊二等奖,1997年获全国优秀期刊三等奖,200年获中科院优秀期刊二等奖
  • 国内外数据库收录:
  • 俄罗斯文摘杂志,美国化学文摘(网络版),英国农业与生物科学研究中心文摘,波兰哥白尼索引,荷兰文摘与引文数据库,荷兰医学文摘,美国生物医学检索系统,美国科学引文索引(扩展库),美国生物科学数据库,英国动物学记录,日本日本科学技术振兴机构数据库,中国中国科技核心期刊,中国北大核心期刊(2004版),中国北大核心期刊(2000版)
  • 被引量:17519