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来自假单胞菌ZJU26的R-2-氯丙酸脱卤酶的手性识别过程研究
  • ISSN号:1671-8135
  • 期刊名称:《中国生物工程杂志》
  • 时间:0
  • 分类:Q789[生物学—分子生物学]
  • 作者机构:[1]浙江大学化学工程与生物工程学系,杭州310027
  • 相关基金:国家重点基础研究发展计划(2011CB710805)、国家自然科学基金面上项目(21076187)资助项目
中文摘要:

立体选择性是2-卤代酸脱卤酶最重要的性质之一,但目前其手性识别过程尚不明确,对其进行研究和解析具有重要意义。以来自假单胞菌ZJU26的R-2-氯丙酸脱卤酶dehDIV-R为模型,研究了R-2-卤代酸脱卤酶的手性识别过程。首先通过测定反应产物的构型,确定dehDIV-R催化底物为SN2反应。通过Discovery Studio 3.0对dehDIV-R进行同源模建及底物分子对接,由对接结果和序列比对确定dehDIV-R立体选择性的关键位点Asn236,预测dehDIV-R的立体选择性与反应时底物到达反应位置的空间位阻密切相关。对dehDIV-R进行虚拟突变,将Asn236位点突变成具有不同空间位阻的残基Ala和Ser,并分别与底物分子进行分子对接,预测突变酶的立体选择性。根据预测结果,对Asn236氨基酸残基进行定点突变,发现在Asn236突变为Ala后的A1酶显示出对RS底物的活力;在Asn236突变为Ser后的S1酶显示出与原始酶相反的立体选择性,实现了立体选择性的反转。与模型的预测结果相符,证明了模型的合理性。

英文摘要:

Stereoselectivity of 2-haloacid dehalogenase is one of the most important properties in biocatalysis, but the process of chiral recognition is not clear. Therefore resolving this problem becomes a research focus. The process of chiral recognition of dehDIV-R, a R-haloacid dehalogenase from Pseudomonas sp ZJU26 was studied. Firstly, by measuring the configuration of the product, the reaction catalyzed by dehDIV-R was defined as SN2 reaction. Through multiple sequence alignment and homology modeling of dehDIV-R, the key site of stereoselectivity of dehDIV-R was found to stereoselectivity of dehDIV-R was forecasted to be related be Asn236. After molecular docking studies, the to the steric hindrance for substrate to reach the specific reacting site. Asn236 of dehDIV-R was virtually mutated to amino acids residues with different steric hindrance, and the stereoselectivities of the mutant enzymes were predicted. According to the prediction results, the mutations of Asn236/Ala and Asn236/Ser were constructed by site-directlng mutagenesis. After measuring their stereoselectivities, A1 with Asn236/Ala showed activity towards S- and R-substrate, and S1 with Asn236/Ser showed inverted activity towards S-substrate instead of R-substrate. These results were consistent with the prediction and the rationality of the model was proved.

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期刊信息
  • 《中国生物工程杂志》
  • 北大核心期刊(2011版)
  • 主管单位:中国科学院
  • 主办单位:中国科学院文献情报中心 中国生物技术发展中心 中国生物工程学会
  • 主编:张树庸
  • 地址:北京市中关村北四环西路33号
  • 邮编:100080
  • 邮箱:biotech@mail.las.ac.cn
  • 电话:010-82624544 82626611-6631
  • 国际标准刊号:ISSN:1671-8135
  • 国内统一刊号:ISSN:11-4816/Q
  • 邮发代号:82-673
  • 获奖情况:
  • 1991年中国科学院科技进步三等奖
  • 国内外数据库收录:
  • 美国化学文摘(网络版),英国农业与生物科学研究中心文摘,波兰哥白尼索引,中国中国科技核心期刊,中国北大核心期刊(2008版),中国北大核心期刊(2011版),中国北大核心期刊(2014版)
  • 被引量:12959