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锯缘青蟹性腺发育与性别分化相关组织混合线性化cDNA文库构建及EST初步分析
  • ISSN号:1009-5470
  • 期刊名称:《热带海洋学报》
  • 时间:0
  • 分类:Q752[生物学—分子生物学]
  • 作者机构:[1]集美大学水产学院,福建省高校水产科学技术与食品安全重点实验室,福建厦门361021, [2]德克萨斯州立大学化学和生化系,圣马克斯德克萨斯78666
  • 相关基金:基金资助:国家自然科学基金项目(30070597,30571430);集美大学创新团队科研基金(2008A001)
中文摘要:

分别提取锯缘青蟹Scyllaserrata卵巢、精巢、眼柄、促雄腺的总RNA.等量混合后经oligote。试剂分离mRNA,利用SMART(Switchmechanismsatthe5’endofRNAtranscript)技术及DSN(dupleX-Specificnuclease)的特性构建线性化cDNA质粒文库。经检测文库约含有5.3×10,重组子,扩增后的文库含有10^11以上重组子。文库的插入cDNA长度为O.5—2.5kb,重组率大于98%。从构建的文库中随机挑取5202个克隆进行大规模EST测序.获得3346条ESTs,其中长度大于100bp的高质量ESTs2697条。经拼接与软件分析,2697ESTs代表了2522个Unigenes,包括2355个Singlets和167个Contigs,冗余率6.49%。EST序列经生物信息学分析(BLASTX,e〈10^-6).发现了Sry—likeproteinC、Soxl4protein、Sox4b、sex—determiningproteinfem-1、vitellogenin、vitellogeninreceptor、cyclinA、cathepsinC和cyclin.dependentkinase2等与性别分化和性腺发育相关的基因.以及热休克蛋白家族、泛素系统、抗氧化防御体系和抗病相关的功能基因。该文库具有较高的质量和利用价值,可为更大规模EST分析及采用基因芯片技术开展锯缘青蟹性腺发育及性别分化相关功能基因的研究奠定基础。

英文摘要:

To study the molecular mechanism in gonad development and sexual differentiation of Scylla serrata, a normalized cDNA library was constructed using the combination of SMART (Switch mechanisms at the 5' end of RNA transcript) and DSN (duplex-specific nuclease) technique. Total RNA was isolated from testis, ovaries, eyestalks and androgenic gland, and then mixed equal amount of RNA from each tissue to make a total RNA pool. Oligotex (QIAGEN) was used to isolate the mRNA from the total RNA pool. The first strand eDNA was synthesized by transcription of mRNA with the SMART technique.The LD-PCR was performed using a modified SMART primer as the primer set, and first-strand cDNA as the template to amplify the cDNA population.After treatment with DSN, the normalized cDNAs were digested with Sfi I enzyme and size fractionated to remove the small products (〈500bp). These normalized SMART cDNAs were ligated into the Sfi I-digested pDNR-LIB Vector. E.coli (TOP10) were transformed with the ligation mixture to generate a normalized cDNA plasmid library.The titer of unamplified cDNA libraries was 5.3x106 cfu-m1-1. The titer of amplified cDNA libraries was above 1011 efu'ml〈. The cDNA inserts sizes ranged between 0.5-2.5 kb. Recombination rate was more than 98%. A large- scale expressed sequence taq (EST) sequencing project was undertaken for the purpose of differentially expressed genes between male and female crabs. A total of 5 202 clones were randomly analyzed by single-pass sequencing from the 5' end. Clustering and assembling of these ESTs resulted in a total of 2 697 high quality sequences with 167 overlapping contigs and 2 355 singletons. The redundancy of the cDNA library was 6.49%. Twenty-seven ESTs showed significant homology (BLASTX e-value〈10-~~) to known genes such as genes related to gonad development and sex differentiation, heat shock protein family, ubiquitin system, disease resistant, antioxidant defense system. Nine ESTs named Sry-like protein C, Soxl4 protein, Soxdb,

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期刊信息
  • 《热带海洋学报》
  • 中国科技核心期刊
  • 主管单位:中国科学院
  • 主办单位:中国科学院南海海洋研究所
  • 主编:张偲
  • 地址:广州市新港西路164号
  • 邮编:510301
  • 邮箱:jto@scsio.ac.cn
  • 电话:020-84459408
  • 国际标准刊号:ISSN:1009-5470
  • 国内统一刊号:ISSN:44-1500/P
  • 邮发代号:82-8
  • 获奖情况:
  • 国家“双效”期刊,1997年获评广东省优秀科技期刊一等奖,2001年进入中国期刊方阵
  • 国内外数据库收录:
  • 俄罗斯文摘杂志,美国化学文摘(网络版),美国剑桥科学文摘,美国生物科学数据库,英国动物学记录,日本日本科学技术振兴机构数据库,中国中国科技核心期刊,中国北大核心期刊(2004版),中国北大核心期刊(2008版),中国北大核心期刊(2011版),中国北大核心期刊(2014版)
  • 被引量:6411