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A genetic variant in pseudogene E2F3P1 contributes to prognosis of hepatocellular carcinoma
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  • 分类:Q786[生物学—分子生物学] Q987[生物学—遗传学;生物学—人类学]
  • 作者机构:[1]Department of Epidemiology and Biostatistics, Jiangsu Key Laboratory of Cancer Biomarkers, Prevention and Treatment, Cancer Center, School of Public Health, Nanjing Medical University, Nanjing, Jiangsu 211166, China, [2]Department of Oncology, Huai'an First People's Hospital, Nanjing Medical University, Huai'an, Jiangsu 223300, China, [3]Pathology Center and Department of Pathology, Soochow University, Suzhou, Jiangsu 215123, China, [4]Department of Hepatopancreatobiliary Surgery, Huai~an First People's Hospital, Nanjing Medical University, Huai'an, Jiangsu 223300, China, [5]Digestive Endoscopy Center, the First Affiliated Hospital of Nanjing Medical University, Nanfing, Jiangsu 210029, China, [6]Department of Hepatobiliary Surgery, Nantong Tumor Hospital, Nantong, Jiangsu 226361, China
  • 相关基金:funded by the National Natural Science Foundation of China(81372606 and 81072344); supported by the National Key Basic Research Program Grant(2013CB911400); the project supportedby the National Science Foundation for Distinguished Young Scholarsof China(81225020); Foundation of Jiangsu Province for Distinguished Young Scholars(BK2012042); Foundation for the Program for NewCentury Excellent Talents in University(NCET-10-0178); the Fok Ying-Tong Education Foundation for Young Teachers in the Higher Education Institutions(122031); Young Tip-top Talents Support Program by the Organization Department of the CPC Central Committee,the Author of National Excellent Doctoral Dissertation(201081); Jiangsu Province Clinical Science and Technology Projects(BL2012008); the Priority Academic Program for the Development of Jiangsu Higher Education Institutions(Public Health and Preventive Medicine) We would like to thank Dr. Juncheng Dai for his excellent technical assistance.
中文摘要:

某些 pseudogenes 可以由为 miRNAs 竞争调整他们的编码蛋白质的表亲并且在癌症起一个活跃生物作用。然而,很少研究与癌症预后在 pseudogenes 集中了于基因变化的协会。我们在癌症相关的 pseudogenes 选择了六潜在地功能的单个核苷酸多型性(SNP ) ,并且执行了盒子唯一的研究没有外科的治疗,在 331 个 HBV 积极的 HCC 病人估计在那些 SNP 和 hepatocellular 癌(HCC ) 的预后之间的协会。比例的危险建模的木头等级测试和考克斯被用于幸存分析。我们发现在 E2F3P1 的 rs9909601 的 A 等位基因显著地与 G 等位基因相比与更好的预后被联系[调整危险比率(HR ) ; = ;0.69, 95% 信心间隔(CI ) ; = ;0.56-0.86, P  ; = ;0.001 ] 。另外,没有化疗和 transcatheter,这保护的效果为病人是更占优势的肝的动脉的 chemoembolization (不作声) 治疗。有趣地,我们也检测了在 rs9909601 和化疗的遗传型之间的一个统计上重要的趋于增加的相互作用或不作声 HCC 幸存上的地位(为趋于增加的相互作用 < 的 P;0.001 ) 。这些调查结果显示在 pseudogene E2F3P1 的 rs9909601 可以是为用汉语的 HCC 预后的一个基因标记。

英文摘要:

Certain pseudogenes may regulate their protein-coding cousins by competing for miRNAs and play an active biological role in cancer. However, few studies have focused on the association of genetic variations in pseudogenes with cancer prognosis. We selected six potentially functional single nucleotide polymorphisms (SNPs) in cancerrelated pseudogenes, and performed a case-only study to assess the association between those SNPs and the prognosis of hepatocellular carcinoma (HCC) in 331 HBV-positive HCC patients without surgical treatment. Log-rank test and Cox proportional hazard models were used for survival analysis. We found that the A allele of rs9909601 in E2F3P1 was significantly associated with a better prognosis compared with the G allele [adjusted hazard ratio (HR) = 0.69, 95% confidence interval (CI) = 0.56-0.86, P = 0.001]. Additionally, this protective effect was more predominant for patients without chemotherapy and transcatheter hepatic arterial chemoembolization (TACE) treatment. Interestingly, we also detected a statistically significant multiplicative interaction between genotypes of rs9909601 and chemotherapy or TACE status on HCC survival (P for multiplicative interaction 〈 0.001). These findings indicate that rs9909601 in the pseudogene E2F3P1 may be a genetic marker for HCC prognosis in Chinese.

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