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Variation Analysis of mtDNA D-loop Sequence of Cheilinus undulatus
  • ISSN号:1671-6647
  • 期刊名称:《海洋科学进展》
  • 时间:0
  • 分类:Q959.468[生物学—动物学] TP301.6[自动化与计算机技术—计算机系统结构;自动化与计算机技术—计算机科学与技术]
  • 作者机构:[1]Tropical Fisheries Research and Development Center, South China Sea Fisheries Research Institute, CAFS, Sanya 572018, China, [2]College of Life Sciences, Nanjing Normal University, Nanjing 210046, China
  • 相关基金:Supported by National Natural Science Foundation of China ( 40966003 ) ; Natural Science Foundation of Hainan Province (809009).
中文摘要:

[Objective] The aim of this paper was to investigate the genetic diversity of mitochondrial DNA D-loop sequences of Cheilinus undulatus populations.[Method] Twenty-five individuals of C. undulatus were collected from the offshore area of Hainan Province. PCR and cloning techniques were used to clone and purify the mtDNA D-loop sequences of C. undulatus populations( n = 25),about 1 400 bp long PCR product was obtained. ClustalX software was adopted for sequence alignment,and results were imported into MEGA5. 0. [Result] According to experimental results,66 mutation sites were detected from 25 individuals,including 0 deletion,4 inserts,59 transition sites,2 transversion sites and 1 transition-transversion site. Pairwise genetic distances of these 25 individuals were calculated by using MEGA5. 0 software. Based on that,NJ phylogenetic tree of these 25 individuals was constructed. Analysis of C. undulatus populations using DNASP software showed that the polymorphic site number( S) was 62,nucleotide diversity(Pi) was 0. 006 06,and average number of nucleotide differences(K) was6. 907. [Conclusion] Overall,there was no significant variation among mtDNA D-loops of C. undulatus populations.

英文摘要:

[ Objective] The aim of this paper was to investigate the genetic diversity of mitochondrial DNA D-loop sequences of Cheilinus undulatus populations. [Method] Twenty-five individuals of C. undu/atus were collected from the offshore area of Hainan Province. PCR and cloning techniques were used to clone and purify the mtDNA D-loop sequences of C. undu/atus populations (n =25), about 1 400 bp long PCR product was obtained. ClustalX software was adopted for sequence alignment, and results were imported into MEGAS. 0. [ Result] According to experimental results, 66 mutation sites were detected from 25 individuals, including 0 deletion, 4 inserts, 59 transition sites, 2 transversion sites and 1 transition-transversion site. Pairwise genetic distances of these 25 individuals were calcu- lated by using MEGA5.0 software. Based on that, NJ phylogenetic tree of these 25 individuals was constructed. Analysis of C. undulatus populations using DNASP software showed that the polymorphic site number (S) was 62, nucleotide diversity (Pi) was 0.006 06, and average number of nucleotide differences (K) was 6. 907. [ Conclusion] Overall, there was no significant variation among mtDNA D-loops of C. undulatus populations. Key words

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期刊信息
  • 《海洋科学进展》
  • 中国科技核心期刊
  • 主管单位:国家海洋局科技司
  • 主办单位:中国海洋学会 国家海洋局第一海洋研究所
  • 主编:袁业立
  • 地址:青岛市高新技术区仙霞岭路6号
  • 邮编:266061
  • 邮箱:hbhh@chinajournal.net.cn
  • 电话:0532-88967804
  • 国际标准刊号:ISSN:1671-6647
  • 国内统一刊号:ISSN:37-1387/P
  • 邮发代号:24-58
  • 获奖情况:
  • 中国自然科学核心期刊,中文核心期刊,中国科技核心期刊,IAPSO中国委员会特约期刊,第三届华东地区优秀期刊
  • 国内外数据库收录:
  • 俄罗斯文摘杂志,美国化学文摘(网络版),美国剑桥科学文摘,英国动物学记录,中国中国科技核心期刊,中国北大核心期刊(2008版),中国北大核心期刊(2011版),中国北大核心期刊(2014版)
  • 被引量:4854