位置:成果数据库 > 期刊 > 期刊详情页
Construction, Characterization, and Chromosomal Mapping of a Fosmid Library of the White-Cheeked Gibbon (Nomascus leucogenys)
  • ISSN号:1672-0229
  • 期刊名称:《基因组蛋白质组与生物信息学报:英文版》
  • 时间:0
  • 分类:Q78[生物学—分子生物学]
  • 作者机构:[1]Key Laboratory of Cellular and Molecular Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, China, [2]Graduate School of Chinese Academy of Sciences, Beijing 100039, China
  • 相关基金:Acknowledgements We thank Drs. Wen Wang and Qi Zhou for a critical reading of the manuscript. This work was supported by the National Natural Science Foundation of China (No. 30270719 and 30623007).
中文摘要:

吉本斯们在进化期间经历了广泛的 karyotype 重新整理并且为学习进化 chromosomal 重新整理的内在的分子的机制代表一个理想的模型。克隆和进化 chromosomal 断点的顺序描述将提供重要卓见进驾驶了如此的激进的 karyotype 的分子的力量,这被期望在长臂猿改组。我们构造了并且描绘非包含 192,000 的白脸颊的长臂猿(Nomascus leucogenys ) 的一个高质量的 fosmid 图书馆 -- 有 38 kb 和 2.5 褶层染色体范围的一种平均 insert 尺寸的冗余的克隆。到 100 随机选择的 fosmid 克隆定序的结束,我们为图书馆产生了 196 个顺序标签。这些定序结束的 fosmid 克隆然后被荧光在 situ 杂交印射到白脸颊的长臂猿的染色体上,并且没有假妄想的克隆被检测。对人的染色体的强风搜索显示出在点击克隆的数字和染色体的数字之间的好关联, fosmid 图书馆的不偏的 chromosomal 分发的一个指示。印射的克隆的 chromosomal 分发与对人、白脸颊的长臂猿染色体的 BLAST 搜索结果也一致。fosmid 图书馆和印射的克隆愿望在更小的无尾猿为进一步学习长臂猿的 chromosomal 重新整理和内在的分子的机制以及为比较 genomic 学习用作一个珍贵资源。

英文摘要:

Gibbons have experienced extensive karyotype rearrangements during evolution and represent an ideal model for studying the underlying molecular mechanism of evolutionary chromosomal rearrangements. It is anticipated that the cloning and sequence characterization of evolutionary chromosomal breakpoints will provide vital insights into the molecular force that has driven such a radical karyotype reshuffle in gibbons. We constructed and characterized a high-quality fosmid li- brary of the white-cheeked gibbon (Nomascus leucogenys) containing 192,000 non- redundant clones with an average insert size of 38 kb and 2.5-fold genome coverage. By end sequencing of 100 randomly selected fosmid clones, we generated 196 se- quence tags for the library. These end-sequenced fosmid clones were then mapped onto the chromosomes of the white-cheeked gibbon by fluorescence in situ hy- bridization~ and no spurious chimeric clone was detected. BLAST search against the human genome showed a good correlation between the number of hit clones and the number of chromosomes, an indication of unbiased chromosomal distribu- tion of the fosmid library. The chromosomal distribution of the mapped clones is also consistent with the BLAST search result against human and white-cheeked gibbon genomes. The fosmid library and the mapped clones will serve as a valu- able resource for further studying gibbons' chromosomal rearrangements and the underlying molecular mechanism as well as for comparative genomic study in the lesser apes.

同期刊论文项目
期刊论文 2 会议论文 1 著作 1
同项目期刊论文
期刊信息
  • 《基因组蛋白质组与生物信息学报:英文版》
  • 主管单位:中国科学院
  • 主办单位:中科院北京基因组研究所
  • 主编:
  • 地址:北京市朝阳区北土城西路7号中科院北京基因组研究所
  • 邮编:100029
  • 邮箱:editor@big.ac.cn
  • 电话:010-82995372
  • 国际标准刊号:ISSN:1672-0229
  • 国内统一刊号:ISSN:11-4926/Q
  • 邮发代号:82-557
  • 获奖情况:
  • 国内外数据库收录:
  • 俄罗斯文摘杂志,美国化学文摘(网络版),波兰哥白尼索引,荷兰文摘与引文数据库,荷兰医学文摘,美国生物医学检索系统,美国剑桥科学文摘,美国生物科学数据库
  • 被引量:52