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利用DGE对黄肉猕猴桃果实着色过程中相关差异基因表达的解析
  • ISSN号:1009-9980
  • 期刊名称:果树学报
  • 时间:2013.3.15
  • 页码:361-368
  • 分类:S663.4[农业科学—果树学;农业科学—园艺学]
  • 作者机构:[1]江西农业大学农学院,南昌330045
  • 相关基金:国家自然科学基金(31160385);江西省科技支撑计划(20121BBF60022)
  • 相关项目:中华猕猴桃果肉色泽相关基因克隆及其定量表达分析
中文摘要:

【目的】构建数字基因表达谱(DGE),寻找调控黄肉猕猴桃果实呈色的潜在关键基因。【方法】以中华猕猴桃(Actinidia chinensis Planch)黄肉品种‘金丰’为试材,利用Illimina/Hisseq测序技术构建其果实发育中3个不同转色期DGE文库,以转录组数据为参考数据库,进行GO功能富集以及Pathway功能富集分析。【结果】结果表明,DGE文库构建转色前期、转色期和成熟期分别获得4 724 009,4 565 159和4 626 730个标签。转色期与转色前期之间差异表达基因的个数为2 641个,成熟期与转色前期有差异表达的基因个数是2 671,成熟期与转色期之间有1457个基因有表达差异。通过GO功能富集及Pathway功能富集分析,分别获得了102条叶绿素Unigenes与111条类胡萝卜素Unigenes,其中12条叶绿素Unigenes及14条类胡萝卜素Unigenes在果实的3个不同转色期有显著差异表达(P〈0.05)。【结论】黄肉猕猴桃呈色的关键基因可能存在于具有显著差异表达的12条调控叶绿素合成以及14条调控类胡萝卜素合成的Unigenes之中。

英文摘要:

[Objective]The objective of this study is to construct the Digital Gene Expression(DGE) tag profiling and find out the potential genes related to controlling the fruit color in yellow flesh kiwifruit. [ Method ]Taking yellow flesh cultivar from A ctinidia chinensis Planch., named ' Jinfeng' as tested mate- rials, and three DGEs of different color-turning stages by Illimina/Hisseq sequencing technique were con- structed and the enrichment analysis of Gene Ontology (GO) and Pathway function was conducted based on the data of transcriptome.[Result] The results showed that there were 4 724 009,4 565 159 and 4 626 730 tags respectively, which obtained from DGE during the color-turning pre-phase, color-turn- ing phase and maturing phase. And 2 641 genes performed discrepant expression in color-turning pre- phase and color-turning phase ; 2 671 genes performed discrepant expression in color-turning pre-phase and mature phase ; 1 457 genes performed discrepant expression in color-turning phase and mature phase. In addition, the enrichment analysis of GO and Pathway function indicated that significant discrepancy existed in the 12 of the 102 Unigenes on chlorophyll synthesis and 14 of the 111 Unigenes on caroteniod synthesis in the three color-turning phases of 'Jinfeng' kiwifruit fruit. [ConclusionlThis study suggested the key genes controlling fruit color in kiwifruit with yellow flesh might present in the 12 Unigenes related chlorophyll synthesis and 14 Unigenes related caroteniod synthesis which held significant discrepancy in gene expression.

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期刊信息
  • 《果树学报》
  • 北大核心期刊(2011版)
  • 主管单位:农业部
  • 主办单位:中国农业科学院郑州果树研究所
  • 主编:王志强
  • 地址:河南省郑州市航海东路南中国农业科学院郑州果树研究所
  • 邮编:450009
  • 邮箱:chinagsxb@163.con
  • 电话:0371-65330928 653387308
  • 国际标准刊号:ISSN:1009-9980
  • 国内统一刊号:ISSN:41-1308/S
  • 邮发代号:36-93
  • 获奖情况:
  • 获河南省优秀期刊二等奖
  • 国内外数据库收录:
  • 俄罗斯文摘杂志,美国化学文摘(网络版),英国农业与生物科学研究中心文摘,美国剑桥科学文摘,日本日本科学技术振兴机构数据库,中国中国科技核心期刊,中国北大核心期刊(2004版),中国北大核心期刊(2008版),中国北大核心期刊(2011版),中国北大核心期刊(2014版)
  • 被引量:18699