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基于16S rDNA测序技术分析不同龄期蚕沙中菌群多样性
  • ISSN号:1001-5302
  • 期刊名称:《中国中药杂志》
  • 时间:0
  • 分类:R378.16[医药卫生—病原生物学;医药卫生—基础医学]
  • 作者机构:[1]江苏大学,江苏镇江212013, [2]南京中医药大学江苏省中药资源产业化过程协同创新中心中药资源产业化与方剂创新药物国家地方联合工程研究中心国家中医药管理局中药资源循环利用重点研究室,江苏南京210023
  • 相关基金:国家自然科学基金项目(81373889,30973885); 教育部新世纪优秀人才支持项目(NCET-13-0873)
中文摘要:

该文对不同龄期烘干前后蚕沙中菌群多样性进行分析与评价,以期明确其菌群组成及其丰富度差异,阐明烘干处理对中药材蚕沙中菌群的影响,为其功效科学内涵的揭示提供依据和参考。应用高通量测序技术测定蚕沙细菌的16S rDNA-V4变异区序列,应用Qiime,Mothur,PICRUSt等软件整理和统计样品序列数目和操作分类单元(OTUs)数量,分析蚕沙样品中菌群的组成、丰度、分布、Alpha多样性、Beta多样性,菌群差异性及对群落的代谢功能等进行预测。该研究获得用于分析的有效序列数为259 250;稀疏曲线表明测序深度充分,OTU的数量接近于饱和。蚕沙菌群主要由变形菌门(Proteobacteria,89.3%)、放线菌门(Actinobacteria,5.0%)、厚壁菌门(Firmicutes,4.4%)、拟杆菌门(Bacteroidetes,1.1%)、蓝细菌(Cyanobacteria,0.2%)组成,其优势菌门为变形菌门。烘干后蚕沙的菌群多样性及丰富度降低,五龄蚕沙尤为明显。PICRUSt分析蚕沙菌群对应的基因功能发现膜转运、碳水化合物代谢、氨基酸代谢、脂质代谢、核苷酸代谢,细胞过程与信号传导等基因功能丰度较高。烘干处理可显著降低蚕沙中致病菌的种类和数目,有利于药材药用品质,相比于低龄期蚕沙,五龄蚕沙更适宜入药。Illumina Mi Seq高通量测序技术为蚕沙菌群的研究提供了更加准确、科学的数据资源。

英文摘要:

This paper investigated the diversity of the silkworm excrement bacterial communities in different ages before and after drying,aiming to clarify the differences of bacterial communities in composition and bacterial abundance and the influences of drying treatment,and provide scientific basis for the efficacy of scientific connotation and utilization of silkworm excrement. High-throughput sequencing technique was used to measure the sequence of 16S rDNA-V4 variable region of bacteria in silkworm excrement. QIIME,Mothur and PICRUSt software programs were employed to sort and calculate the number of sequences and operational taxonomic units( OTUs) for each sample. Thereafter,the abundance,distribution,alpha diversity index of species,beta diversity and bacterial communities diversity among different sample groups and predicted the bacterial gene functions were analyzed. In this study,the numbers of effective sequences for six samples were 259 250; the rarefaction curves showed a sufficient sequencing depth,and the number of OTUs was close to saturation. The bacteria in silkworm excrement belonged to the following five phylums: Proteobacteria( 89. 3%),Actinobacteria( 5. 0%),Firmicutes( 4. 4%),Bacteroidetes( 1. 1%) and Cyanobacteria( 0. 2%). The dominant specie was Cyanobacteria of the total bacteria identified,respectively. The abundances and diversities of the silkworm excrement bacterial communities have been reduced after drying treatment,especially the silkworm excrement of the fifth instar. PICRUSt analysis was performed to show that abundance of the functional genes such as membrane transport,carbohydrate metabolism,amino acid metabolism,lipid metabolism,nucleotide metabolism,cellular processes and signaling were relatively high. The result showed that the drying treatment could decreased the species and numbers of pathogenic bacteria in silkworm excrement obviously and improve the quality of medicinal materials. Compared with the lower ages,silkworm excrement of fifth instar seems li

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期刊信息
  • 《中国中药杂志》
  • 北大核心期刊(2011版)
  • 主管单位:中国科学技术协会
  • 主办单位:中国药学会
  • 主编:肖培根
  • 地址:北京市东直门内南小街16号
  • 邮编:100700
  • 邮箱:cjcmm2006@126.com
  • 电话:010-64087589
  • 国际标准刊号:ISSN:1001-5302
  • 国内统一刊号:ISSN:11-2272/R
  • 邮发代号:2-45
  • 获奖情况:
  • 国内外数据库收录:
  • 美国国际药学文摘,美国化学文摘(网络版),英国农业与生物科学研究中心文摘,波兰哥白尼索引,荷兰文摘与引文数据库,荷兰医学文摘,美国生物医学检索系统,美国生物科学数据库,日本日本科学技术振兴机构数据库,中国中国科技核心期刊,中国北大核心期刊(2004版),中国北大核心期刊(2008版),中国北大核心期刊(2011版),中国北大核心期刊(2014版),英国英国皇家化学学会文摘,中国北大核心期刊(2000版)
  • 被引量:94720