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急性髓系白血病细胞单链DNA适体的体外筛选
  • ISSN号:1672-7347
  • 期刊名称:《中南大学学报:医学版》
  • 时间:0
  • 分类:R733.71[医药卫生—肿瘤;医药卫生—临床医学]
  • 作者机构:[1]中南大学湘雅医院血液科,长沙410008
  • 相关基金:国家自然科学基金(30871094)
中文摘要:

目的:筛选识别急性髓系白血病M2型(acute myeloblastic leukemia M2 subtype,AML-M2)CD33+/CD34-细胞的核酸适体(aptamers)。方法:以AML-M2型白血病CD33+/CD34-细胞为靶细胞,正常人CD33+/CD34-细胞为反筛选细胞,采用细胞-指数富集配体系统进化(cell-systematic evolution of ligands by exponential enrichment,C-SELEX)技术,体外反复筛选单链DNA(single strand deoxyribonucleic acid,ssDNA)文库的适体,经聚合酶链式反应(polymerasechain reaction,PCR)扩增产生次级文库。然后将最终轮次的次级ssDNA文库克隆、测序并分析各适体的一级和二级结构。结果:琼脂糖凝胶电泳结果显示:每轮筛选出来的次级ssDNA文库PCR扩增产物均可见到清晰的DNA条带。经过13轮的反复筛选,次级ssDNA文库与细胞结合的荧光强度从2.14%上升到51.12%,至第13轮趋于稳定状态。对30个克隆子序列测定结果显示:22个适体一级结构分别含有AAGTA,TATCT,AGATG和AAATT 4个保守序列,另8个适体无此保守序列。二级结构模拟结果显示:30个适体含有4种不同的茎环、凸环模拟结构。结论:C-SELEX技术可用于急性髓系白血病原代细胞适体的筛选,筛选到的AML-M2型白血病CD33+/CD34-细胞适体有望用于白血病的诊断与治疗。

英文摘要:

Objective: To screen aptamers binding CD33+/CD34– cells from patients with acute myeloblastic leukemia M2 subtype(AML-M2).Methods: CD33+/CD34– cells from patients with AML-M2 were taken as targeted cells,CD33+/CD34– cells from normal people were taken as anti-selecting cells,and aptamers in the single strand deoxyribonucleic acid(ssDNA) library were then selected repeatedly by cell-systematic evolution of ligands by exponential enrichment(C-SELEX) technology,and amplified by polymerase chain reaction(PCR) to generate sub-ssDNA library.During the experiment,PCR amplification with fluorescently labeled primer and flow cytometry were performed to analyze the aptamers’ enrichment of sub-library,and the final round product of the sub-ssDNA library was cloned.After the sequencing,the primary and secondary structures of the aptamers were analyzed. Results: Electrophoresis indicated that the product of PCR amplification for each round sub-ssDNA library was able to see a clear DNA band in the agarose gel.After 13 rounds of screening,the fluorescence intensity of the sub-ssDNA library binding the cells ranged from 2.14% to 51.12%,reaching a steady state at the 13th round.A total of 30 clones were selected and sequenced,22 of which contained 1 of the 4 conserved sequences of AAGTA,TATCT,AGATG and AAATT in their primary structure,but the remained eight aptamers contained none of the conserved sequence.Secondary structure analysis indicated that four stem-loops and loop simulation convex structures existed in the aptamers. Conclusion: C-SELEX technology can be used to screen the aptamers binding primary cells from patients with leukemia.The aptamers selected from the CD33+/CD34– cells from the patients of AML-M2 subtype might be used for the diagnosis and treatment for leukemia.

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期刊信息
  • 《中南大学学报:医学版》
  • 北大核心期刊(2011版)
  • 主管单位:中华人民共和国教育部
  • 主办单位:中南大学
  • 主编:李桂源
  • 地址:湖南省长沙市湘雅路110号 中南大学湘雅医学院75号信箱
  • 邮编:410078
  • 邮箱:xyxb2005@vip.163.com xyxb2005@126.com
  • 电话:0731-84805495 84805496
  • 国际标准刊号:ISSN:1672-7347
  • 国内统一刊号:ISSN:43-1427/R
  • 邮发代号:42-10
  • 获奖情况:
  • 省优秀科技期刊一等奖,全国优秀科技期刊三等奖,1992、1996年,中国生物医学核心期刊,中国期刊方阵双效期刊
  • 国内外数据库收录:
  • 美国化学文摘(网络版),荷兰文摘与引文数据库,美国生物医学检索系统,中国中国科技核心期刊,中国北大核心期刊(2008版),中国北大核心期刊(2011版),中国北大核心期刊(2014版)
  • 被引量:11694