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Genetic Evolution Analysis on Wild Isolates of Citrus Tristeza Virus Originated in China Based on Coat Protein Genes Sequences
  • ISSN号:1009-9980
  • 期刊名称:《果树学报》
  • 时间:0
  • 分类:S436.661.19[农业科学—农业昆虫与害虫防治;农业科学—植物保护] Q78[生物学—分子生物学]
  • 作者机构:[1]Citrus Research Institute, Southwest University~Citrus Research Institute, Chinese Academy of Agricultural Sciences, Chongqing 400712 P.R. China, [2]Jiangxi Navel Orange Engineering and Technology Research Center, Gannan Normal University, Ganzhou 341000, P.R.China
  • 相关基金:Acknowledgements This work was supported by the National Natural Science Foundation of China (30900977), the Key Project 210111 of Chinese Ministry of Education and Natural Science Foundation Project ofCQ CSTC (2009BB1310).
中文摘要:

上衣蛋白质(CP ) 基因从 11 的病毒的粒子被克隆并且定序在中国和 4 汉语从野柠檬植物收集的柠檬 tristeza 病毒(CTV ) 孤立分别地从栽培香甜的橘子和 pummelo 变化孤立。由分析并且比较 CP 基因的核苷酸和氨基酸序列, 11 野 CTV 孤立与 4 中国 CTV 被发现超过 92% 相同孤立, 21 异国情调的 CTV 从栽培柠檬孤立。从 91 ~ 100% CTV CP 基因,在野类型柠檬植物的序列通常是保存的井。基因进化分析显示 CP 基因的 GC% 是不到 AT% ,并且更多的转变比 transversion 在 CP 基因被发现, transition/transversion 比率在种类之中从 6.3 ~ 7.0 。替换频率在第三 codon 是最高的,由第一和第二 codon 列在后面。到同义的变化(dS ) 的非同义的变化(dN ) 的比率比 1 远低,建议 CP 基因可能经历了净化在进化的选择。种系发生的分析表明 11 CTV 在属于的中国野类型柠檬孤立不同的种系发生的簇,并且分享了有另外的栽培柠檬的更高的相同和 CTV 从不同国家孤立的更靠近的关系,它在 CTV 之中显示了复杂基因关系孤立。另外, CTV 与通常定位进一样的簇的类似的生物特征孤立。因此,结论被画那个致病力对 CTV 的进化和起源批评。

英文摘要:

The coat protein (CP) genes were cloned and sequenced from viral particles of 11 isolates of citrus tristeza virus (CTV) collected from wild citrus plants in China and 4 Chinese isolates from cultivated sweet orange and pummelo varieties, respectively. By analyzing and comparing the nucleotide and amino acid sequences of CP genes, the 11 wild CTV isolates were found over 92% identical with 4 Chinese CTV isolates and 21 exotic CTV isolates from cultivated citrus. From 91 to 100% of the CTV CP gene sequences in wild type citrus plants were generally well conserved. Genetic evolution analysis indicated that the GC% of the CP gene was less than AT%, and more transition were found in the CP genes than transversion with the transition/transversion ratio ranging from 6.3 to 7.0 among species. The substitution frequency was the highest at the third codon, followed by the first and second codon. The ratio of non-synonymous mutations (du) to synonymous mutations (ds) was far lower than 1, suggesting that the CP gene might have experienced purifying selection in the evolution. Phylogenetic analysis revealed that the 11 CTV isolates in Chinese wild type citrus belonged to different phylogenetic clusters, and shared higher homology and closer relationships with other cultivated citrus CTV isolates from different countries, which indicated complicated genetic relationships among the CTV isolates. In addition, CTV isolates with similar biological characteristics usually located into the same clusters. Therefore, the conclusion was drawn that pathogenicity was critical to evolution and origin of CTV.

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期刊信息
  • 《果树学报》
  • 北大核心期刊(2011版)
  • 主管单位:农业部
  • 主办单位:中国农业科学院郑州果树研究所
  • 主编:王志强
  • 地址:河南省郑州市航海东路南中国农业科学院郑州果树研究所
  • 邮编:450009
  • 邮箱:chinagsxb@163.con
  • 电话:0371-65330928 653387308
  • 国际标准刊号:ISSN:1009-9980
  • 国内统一刊号:ISSN:41-1308/S
  • 邮发代号:36-93
  • 获奖情况:
  • 获河南省优秀期刊二等奖
  • 国内外数据库收录:
  • 俄罗斯文摘杂志,美国化学文摘(网络版),英国农业与生物科学研究中心文摘,美国剑桥科学文摘,日本日本科学技术振兴机构数据库,中国中国科技核心期刊,中国北大核心期刊(2004版),中国北大核心期刊(2008版),中国北大核心期刊(2011版),中国北大核心期刊(2014版)
  • 被引量:18699