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滚环转录结合定点切割制备小RNA的技术探究
  • ISSN号:1004-311X
  • 期刊名称:《生物技术》
  • 时间:0
  • 分类:Q789[生物学—分子生物学]
  • 作者机构:中国海洋大学食品科学与工程学院,山东青岛266003
  • 相关基金:国家自然科学基金项目(No.31571937、No.31201327);山东省博士后基金
中文摘要:

[目的]优化滚环转录及定点酶切中关键技术,提高小RNA合成量。[方法]通过在引物与模板之间设计不互补部分,形成泡状凸起,引发滚环转录;使用天然DNAzyme 10-23定点剪切转录产物;另外改变RNase H酶切中Aid-DNA修饰核酸数目及位置,指导RNase H切割;DNaseⅠ降解模板DNA后,不经高温失活,直接进入RNase H酶切体系。[结果]由凸起结构引发转录,转录效率提高约5倍;RNase H在仅有3个修饰核酸间隔分布的Aid-DNA-3b辅助下,可高效定点剪切,而DNAzyme 10-23无法充分切割滚环转录产物;未失活的DNaseⅠ对Aid-DNA-3b的降解仅占8.7%,可直接进入RNase H酶切体系。[结论]引入凸起结构可提高转录效率约5倍;DNaseⅠ可直接进入酶切体系,随后使用Aid-DNA-3b介导酶切,产量可提高1.4倍。

英文摘要:

[ Objective ] To improve the yield of small RNA synthesis by optimizing key procedures during rolling circle tran- scription and site - specific disconnection. [ Methods ] The transcription was initiated from transcription bubble which was formed by partly unpaired template and primer. Then the large size RNA was specific cleaved by DNAzyme 10 - 23. And em- ployed the Aid - DNAs containing modified nucleotides with different number and position to guide RNase H site - specific dis- connection. The template DNA was digested by DNase I and the product was directly cleaved by RNase H without high temper- ature inactivation of DNase I [ Results] The transcription efficiency was improved by ~ 5 folds due to the formation of bubble. RNase H could effectively cleave RNA product when three interval distributed modified nucleotides was existed in Aid - DNA, however,the DNAzyme I0 -23 could not effectively cleave the transcription product. The inactivation of DNase I caused 8.7% Aid -DNA -3b loss thus could be omitted. [ Conclusion] The transcription efficiency was improved -5 fold by introdu- cing the bubble. The inactivation of DNase I with high temperature could be omitted and the final yield could be improved by 1.4 fold with the help of Aid - DNA - 3b.

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期刊信息
  • 《生物技术》
  • 北大核心期刊(2014版)
  • 主管单位:黑龙江省科学院
  • 主办单位:黑龙江省科学院微生物研究所 黑龙江省微生物学会 黑龙江省生物工程学会
  • 主编:张介驰
  • 地址:哈尔滨市道里区兆麟街68号
  • 邮编:150010
  • 邮箱:swjszz@163.com
  • 电话:0451-84615121
  • 国际标准刊号:ISSN:1004-311X
  • 国内统一刊号:ISSN:23-1319/Q
  • 邮发代号:14-225
  • 获奖情况:
  • 中国生物学核心期刊,中国核心期刊(遴选)数据库...
  • 国内外数据库收录:
  • 美国化学文摘(网络版),中国北大核心期刊(2008版),中国北大核心期刊(2011版),中国北大核心期刊(2014版)
  • 被引量:13503