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Klenow(exo-)的表达、活性测定及其在焦磷酸测序中的应用
  • ISSN号:1005-8915
  • 期刊名称:《药物生物技术》
  • 时间:0
  • 分类:Q812[生物学—生物工程]
  • 作者机构:[1]中国药科大学生命科学与技术学院,江苏南京210009, [2]南京大学医学部附属金陵医院药理科,江苏南京210002, [3]中国药科大学药物分析教研室,江苏南京210009
  • 相关基金:国家自然科学基金(No.31200638,21275161,21475151,31300704);江苏省基础研究计划(自然科学基金)项目(No.BK20151445,No.BK20140656);中国博士后科学基金项目(No.2012M512179,2013T60962,No.2015M572809);中央高校基本科研业务费重点项目(No.2015ZD008);药物质量与安全预警教育部重点实验室资助项目(No.DQCP2015MS02);江苏高校优势学科建设工程资助项目;江苏省青蓝工程资助.
中文摘要:

野生的Klenow聚合酶具有3’-5’外切酶活性,会对引物进行切割而造成焦磷酸测序产生错误的延伸信号。为了制备缺失3’外切酶活性的Klenow聚合酶用于焦磷酸测序反应,该研究全合成了外切酶活性缺失突变的K/enow酶基因编码序列,将其插入到表达载体pET28a(+)中构建重组质粒,并转化到大肠杆菌中,表达外切酶活性缺失的Klenow酶(Klenow(exo-))。通过优化诱导温度、诱导时间与诱导剂浓度,得到了Klenow(exo-)的最佳表达条件为30℃时诱导表达5h且IPTG浓度为0.1mmol/L。利用Ni+柱亲和层析法纯化得到了相对分子质量约为67000的重组Klenow(exo-)酶,并建立了基于生物发光的酶活测定方法,最终将其用于焦磷酸测序反应。结果表明,制备的重组酶具有良好的聚合酶活性但缺失了3’外切酶活性,可成功测定DNA待测模板序列,为焦磷酸测序技术提供了一个有效的关键酶。

英文摘要:

The wild Klenow fragment is the large fragment of E. coli DNA polymerase I , lacking 5'-3' exonuclease activity while having the 5'-3' polymerase activity and the 3 '-5' exonuclease activity of DNA polymerase I. It was widely used in molecular biology experiment. However, the 3'-5' exonuclease activity of the wild Klenow fragment would cut the sequencing primer when used in pyro- sequencing, causing the false sequencing signals. In order to prepare the Klenow fragment lacking 3' exonuclease activity for pyrose- quencing, the coding gene fragment of D424A mutant Klenow with deficient exonuclease activity was synthesized, and inserted into the pET28a( + ) expression vector to construct the recombinant expression vector, named pET28a( + )-Klenow(exo-) ,which was transformed into E. coli ArcticExpressTM to express the exonuclease-deficient Klenow fragment (Klenow(exo-) ). By optimizing the temperature time of induction, and the inducer concentrations, the optimal expression condition was obtained as cultivating the recombinant strain,inducing with 0.1 mmol/L IPTG for 5 h at 30 ℃. The recombinant protein with molecular mass of 67 kDa was purified by using Ni + affinity chromatography and eluted by buffer containing 300 mmol/L imidazole. The SDS-PAGE analysis demonstrated that the recombinant protein had/a good purity. Then the activity detecting method of Klenow(exo-) based on biolumi- nescent reaction was established. And the activity of Klenow(exo-) was calculated as 1.37 U/μL and the specific activity was 354.12 U/mg. This activity detecting method was free of radiolabel and was expected to be used in determination of other polymerase activity. Finally, the Klenow(exo-) was applied in pyrosequencing. The results showed that the Klenow(exo-) had a good polymerase activity and no 3' exonuclease activity, and could be applied in the pyrosequencing to sequence a single-strand DNA template. Our study provides an effective key enzyme for pyrosequencing.

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期刊信息
  • 《药物生物技术》
  • 中国科技核心期刊
  • 主管单位:中华人民共和国教育部
  • 主办单位:中国药科大学 中国医药科技出版社 中国药学会
  • 主编:王旻
  • 地址:南京童家巷24号
  • 邮编:210009
  • 邮箱:ywswjs@cpu.deu.cn
  • 电话:025-83220372
  • 国际标准刊号:ISSN:1005-8915
  • 国内统一刊号:ISSN:32-1488/R
  • 邮发代号:28-243
  • 获奖情况:
  • 国内外数据库收录:
  • 被引量:6766