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启东肝癌高发区乙肝病毒流行株全基因分析
  • ISSN号:1000-7431
  • 期刊名称:《肿瘤》
  • 时间:0
  • 分类:R735.7[医药卫生—肿瘤;医药卫生—临床医学] R730.231.3[医药卫生—肿瘤;医药卫生—临床医学]
  • 作者机构:[1]复旦大学公共卫生学院,上海200032, [2]上海交通大学肿瘤研究所分子诊断室,上海200032
  • 相关基金:国家自然科学基金资助项目(编号:30471951)
中文摘要:

目的:通过对江苏启东地区乙型肝炎病毒(HBV)全基因序列的分析,探讨该地区肝癌高发的分子病毒学病因。方法:以蛋白酶K消化后,酚/氯仿抽提7例肝炎和7例肝癌患者血清中DNA。应用聚合酶链反应(PCR),扩增血清中HBV基因全长,克隆至T载体后行全自动测序。以PHYLIP软件构建的系统进化树判断HBV的基因型;以Clastal W软件对序列进行突变分析。结果:14例标本中有12例为C基因型,2例为B基因型。肝癌和肝炎组中HBV基因型类别分布无差异。有5例HBV发生了PreS2的缺失突变,其中肝癌标本4例(57.1%),肝炎标本仅1例(14.3%)。HBV基因组中常见的点突变为PreS1区的nt.3116及核心启动子区的nt.1762/1764,发生率高达78.6%(11/14)。与肝炎组相比,肝癌中点突变发生率显著增高的位点为前C区nt.1899G→A的突变(P=0.01)及核心启动子区nt.1653C→T的突变(P=0.05)。结论:启东地区HBV以C基因型为主;启东HBV基因组中可能存在着与肝癌相关的点突变和缺失突变。

英文摘要:

Objective :To investigate the genotype of hepatitis B virus (HBV) in Qidong area and further characterize the sequence properties of HBV isolated from hepatocellular carcinoma (HCC) and chronic hepatitis (CH) patients. Methods:DNA was extracted from serum samples of 7 HCC and 7 CH patients by conventional proteinase K digestion/phenol extraction method. The full-genome of HBV was amplified by polymerase chain reaction (PCR) using serum DNA as the template. PCR product was cloned into Tvector and DNA sequence was obtained by ABI auto-sequencing. The genotypes of HBV were determined by the Phylogenetic tree using PHYLIP software based on the entire HBV sequences and mutation analysis was carried out by the Clastal W software. Results:Among the total 14 HBV strains, 12 belonged to genotype C and 2 belonged to genotype B. No significant difference of genotype distribution existed between HBV and HCC groups. Deletion in PreS2 region was observed in 4 (57.1%) HCC patients and 1 ( 14.3% ) CH patient. The mutational hotspots, which incidence was as high as 78.6% ( 11/14), were located at nt. 3116 ( PreS1 region) and nt. 1762/1764 ( core promoter/X region). Compared with HBV isolated from of CH patients, two point mutations, i.e. nt. 1899A in PreC region ( P = 0.01 ) and nt. 1653T in core promoter/X region ( P = 0.05 ), occurred more frequently in HCC patients. Conclusion : The prevalent HBV genotype in Qidong area is genotype C. HCC-related point mutation and deletion of HBV may exist in Qidong genomes.

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期刊信息
  • 《肿瘤》
  • 北大核心期刊(2011版)
  • 主管单位:教育部
  • 主办单位:上海市肿瘤研究所
  • 主编:高玉堂
  • 地址:上海斜土路2200弄25号
  • 邮编:200032
  • 邮箱:tumorsci@yahoo.com.cn
  • 电话:021-64436792
  • 国际标准刊号:ISSN:1000-7431
  • 国内统一刊号:ISSN:31-1372/R
  • 邮发代号:4-289
  • 获奖情况:
  • 中文核心期刊,中国科技论文统计源核心期刊
  • 国内外数据库收录:
  • 美国化学文摘(网络版),英国农业与生物科学研究中心文摘,波兰哥白尼索引,荷兰文摘与引文数据库,荷兰医学文摘,美国剑桥科学文摘,日本日本科学技术振兴机构数据库,中国中国科技核心期刊,中国北大核心期刊(2004版),中国北大核心期刊(2008版),中国北大核心期刊(2011版),中国北大核心期刊(2014版),瑞典开放获取期刊指南,中国北大核心期刊(2000版)
  • 被引量:19202