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禽U6启动子的克隆、序列分析及其驱动的SiRNA表达
  • ISSN号:0578-1752
  • 期刊名称:《中国农业科学》
  • 时间:0
  • 分类:S794.1[农业科学—林木遗传育种;农业科学—林学] Q522[生物学—生物化学]
  • 作者机构:[1]扬州大学兽医学院,江苏扬州225009, [2]江苏畜牧兽医职业技术学院,江苏泰州225300
  • 相关基金:基金项目:国家自然科学基金资助项目(30460090)
中文摘要:

【目的】分离用于禽源细胞中表达短干扰RNA(short interference RNA,SiRNA)的禽U6启动子。【方法】以鸡基因组为模板进行PCR扩增,将扩增产物进行序列测定和生物信息学分析,并将其插入报告基因载体pEGFP-N1中,获得siRNA表达载体pGFP—U6,将由软件预测针对GFP基因的SiRNA所对应的shRNA(shorthairpin RNA)插入其中,获得pGFP—U6-shRNA;以含人H1启动子的siRNA表达载体pGFP—H1—shRNA为对照,分别转染COS-1和DF-1细胞,用荧光显微镜和流式细胞仪测定转染细胞培养中GFP阳性细胞数和荧光总量。【结果】克隆的U6启动子位于鸡28号染色体,与发表的鸡U6—3启动子同源性为97.2%,含多个0ct-1序列,不含CACCC框、SPH和PSE等聚合酶Ⅲ启动子序列,TA框不典型;在pGFP-U6-shRNh转染的哺乳动物源COS-1细胞培养中,GFP阳性细胞数和荧光总量均有所下降,但不如pGFP-H1-shRNA转染细胞显著;在pGFP—U6-shRNA转染的禽源DF-1细胞培养中,不仅GFP阳性细胞数和荧光总量显著下降,而且基因沉默效果显著优于pGFP—H1-shRNA转染细胞。【结论】成功克隆的禽U6启动子不仅能有效转录SiRNA,而且转录活性具有相对的细胞种属特异性。

英文摘要:

[ Objective ] To cloning avian U6 promoter for construction of short interference RNA (siRNA) expression vectors in avian cells. [Method] A putative chicken U6 promoter from chicken genomic DNA was amplified by PCR. After sequencing and bioinformatics analysis, the putative promoter was inserted into the reporter plasmid pEGFP-N1 together with GFP-specific short hairpin RNA (shRNA) and resulted in a siRNA expression vector pGFP-U6-shRNA. Then, using human H1 promoter-driven siRNA expression vector pGFP-H 1-shRNA as the control, the simian-originated COS-1 cells or chicken embryonic fibroblast (DF-1) cells were cotransfected with the siRNA expression vector pGFP-U6-shRNA, and the GFP-positive cell numbers and total fluorescence were detected by fluorescence microscopy and flow cytometry. [ Result ] The PCR product was 560bp long and located on chicken chromosome 28 with a percentage identity of 97.2% to the published chicken U6-3 promoter. Bioinformatics analysis showed that the putative chicken U6 promoter contained several Oct-1 motifs and a weak TATA box without other Pol Ⅲ promoter elements. In COS-1 cells, transfection with pGFP-U6-siRNA resulted in significant decreases in both the number of GFP-positive cells and total fluorescence, but significance was lower than that of transfection with pEGFP-H1-shRNA. While in DF-1 cells, transfection with pGFP-U6-shRNA resulted in significantly higher gene silencing effect than cotransfection with pEGFP-HI-shRNA. [ Conclusion] These data suggest that a chicken U6 promoter was successfully cloned, which can efficiently transcribe gene-specific siRNA expression in avian cells.

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期刊信息
  • 《中国农业科学》
  • 中国科技核心期刊
  • 主管单位:中华人民共和国农业部
  • 主办单位:中国农业科学院 中国农学会
  • 主编:万建民
  • 地址:北京中关村南大街12号中国农业科学院图书馆楼4101-4103室
  • 邮编:100081
  • 邮箱:zgnykx@caas.cn
  • 电话:010-82109808 82106279
  • 国际标准刊号:ISSN:0578-1752
  • 国内统一刊号:ISSN:11-1328/S
  • 邮发代号:2-138
  • 获奖情况:
  • 中国期刊方阵“双高”期刊,第三届中国出版政府奖提名奖
  • 国内外数据库收录:
  • 美国化学文摘(网络版),英国农业与生物科学研究中心文摘,波兰哥白尼索引,英国动物学记录,日本日本科学技术振兴机构数据库,中国中国科技核心期刊,中国北大核心期刊(2004版),中国北大核心期刊(2008版),中国北大核心期刊(2011版),中国北大核心期刊(2014版),英国食品科技文摘,中国北大核心期刊(2000版)
  • 被引量:85620