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Molecular dynamics simulations exploring drug resistance in HIV-1 proteases
  • ISSN号:1000-2367
  • 期刊名称:《河南师范大学学报:自然科学版》
  • 时间:0
  • 分类:S332.3[农业科学—作物遗传育种;农业科学—农艺学] TG111.4[金属学及工艺—物理冶金;金属学及工艺—金属学]
  • 作者机构:[1]College of Life Sciences and Biotechnology, Shanghai Jiaotong University, Shanghai 200240, China, [2]Shanghai Centre for Systems Biomedicine, Shanghai Jiaotong University, Shanghai 200240, China, [3]Shanghai Centre for Bioinformation Technology, Shanghai 200035, China
  • 相关基金:This work was supported by the National High Technology Research and Development Program of China (2006AA020406, 2007AAO2Z330 and 2007AAO2Z333), National Natural Science Foundation of China (30770502 and 30870476) and Natural Science Foundation of Shanghai (10ZR1421500), as well as the State Key Laboratory of Explosion Science and Technology Beijing Institaute of Technology (KFJJ09-02) and National Basic Research Program of China (2005CB724303).
中文摘要:

尽管 HIV-1 子类型 B 仍然在发达国家统治流行爱滋病,在开发国家的越来越多的人正在受不了非子类型 B 病毒的流行病。什么是更坏的, antiretroviral 药的 combinational 使用的功效被药抵抗的快速的发展逐渐地损害。获得卓见进药抵抗, 10-ns MD 模拟同时与 4 不同朊酶( B wt , B 傻瓜, F wt 和 F 傻瓜)在 TL-3 禁止者的建筑群上被进行,在哪个之中有 TL-3 禁止者的 B wt 朊酶的建筑群被当作控制组。 MD 数据的详细分析显示对 TL-3 的 B 傻瓜的药抵抗主要源于一张重要的氢契约的损失并且 F , wt 被恐水病的相互作用的减少在 S1/S1 引起衣袋,当两上面提及的二个原因是 F 傻瓜朊酶抵抗的原因时。这些结果在对以前的实验的好同意,揭示为对 TL-3 禁止者的上述的朊酶子类型的药抵抗的可能的机制。另外,另一个指示被获得 M36I, V82A 和 L90M 的变化可以导致结构的变换以便改变禁止者绑定模式。

英文摘要:

Although HIV-1 subtype B still dominates the epidemic AIDS in developed countries, an increasing number of people in devel- oping countries are suffering from an epidemic of non-subtype B viruses. What is worse, the efficacy of the combinational use of antiretroviral drugs is gradually compromised by the rapid development of drug resistance. To gain an insight into drug resistance, 10-ns MD simulations were simultaneously conducted on the complexes of the TL-3 inhibitor with 4 different proteases (Bwt, Bmut, Fwt and Fmut), among which the complex of the Bwt protease with the TL-3 inhibitor was treated as the control group. Detailed analyses of MD data indicated that the drug resistance of Bmut against TL-3 mainly derived from loss of an important hydrogen bond and that of Fwt was caused by the decrease of hydrophobic interactions in S 1/S 1' pocket, while both of the two reasons mentioned above were the cause of the Fmut protease's resistance. These results are in good agreement with the previous experiments, revealing a possible mechanism of drug resistance for the aforementioned protease subtypes against the TL-3 inhibitor. Additionally, another indication was obtained that the mutations of M36I, V82A and L90M may induce structural transforms so as to alter the inhibitor's binding mode.

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期刊信息
  • 《河南师范大学学报:自然科学版》
  • 北大核心期刊(2011版)
  • 主管单位:河南师范大学
  • 主办单位:河南师范大学
  • 主编:王记录
  • 地址:河南省新乡市建设东路46号
  • 邮编:453007
  • 邮箱:
  • 电话:0373-3329394 3329272
  • 国际标准刊号:ISSN:1000-2367
  • 国内统一刊号:ISSN:41-1109/N
  • 邮发代号:36-55
  • 获奖情况:
  • 国家新闻出版局、国家科委优秀学报奖,河南省科委、河南省教委优秀学报
  • 国内外数据库收录:
  • 美国化学文摘(网络版),美国数学评论(网络版),英国农业与生物科学研究中心文摘,德国数学文摘,英国动物学记录,中国中国科技核心期刊,中国北大核心期刊(2004版),中国北大核心期刊(2008版),中国北大核心期刊(2011版),中国北大核心期刊(2014版)
  • 被引量:7535