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Evaluating the reliability of microsatellite genotyping from low-quality DNA templates with a polynomial distribution model
  • ISSN号:1000-1050
  • 期刊名称:《兽类学报》
  • 时间:0
  • 分类:Q78[生物学—分子生物学] Q987[生物学—遗传学;生物学—人类学]
  • 作者机构:[1]Key Laboratory of Resource Biology and Biotechnology in Western China of Ministry of Education, College of Life Sciences, Northwest Univer-sity, Xi'an 710069, China, [2]Ecology & Conservation Group, Institute for Natural Sciences, Massey University, Auckland 904, New Zealand, [3]Institute of Zoology, Shaanxi Academy of Sciences, Xi'an 710032, China, [4]Shaanxi Wild Animal Rescue and Research Center, Xi'an 710402, China
  • 相关基金:We thank Zhouzhi National Nature Reserve for giving us permission to conduct this study. We thank Northwest University students W Wei and H T Zhao for their field work assistance and L L Wu and H Y Zhang for their assistance with laboratory experiments, and Prof. S W Chang and Prof. Y G He for providing comments on the manuscript. This work was supported by the National Natural Science Foundation of China (30970379, 30970444 and 30970168), the Natural Science Foundation of Shaanxi Province (2009JQ3001), the Scientific Research Foundation of the Educa- tion Department of Shaanxi Province (09JK748), and the Opening Foundation of the Key Laboratory of Resource Biology and Biotechnology in Western China (Northwest University) of Ministry of Education.
中文摘要:

使用的分子的研究跟踪 DNA,例如从博物馆,标本,古老或法庭的样品和样品 noninvasively 获得了,经常有 DNA 模板的低质量的一个普通问题。扩大错误例如突变而产生之遗传的退学学生和假等位基因,可以用如此的样品在聚合酶链反应(PCR ) 期间产生。有差别地对待同质接合体和异质接合体的一个数学模型被开发了测量样品质量并且计算使用多重试管的途径的信心水平。我们使用从 26 单个四川收集的拔的头发样品翘鼻子猴子(Rhinopithecus roxellana ) 到测试模型。在这种情况中, 99% 罐头的信心水平被三积极 PCR 完成。如果样品质量是很差的并且要求许多 PCR 复制,一个其他的多重步的 genotyping 方法被推荐。这个模型使研究人员能通过预研项目优化试验性的协议并且用 noninvasive 采样方法获得可靠基因信息。

英文摘要:

Molecular studies using trace DNA, such as from museum specimens, ancient or forensic samples and samples obtained noninva- sively, often have a common problem of low quality of DNA templates. Amplification errors, such as allelic dropout and false allele, may arise during polymerase chain reaction (PCR) using such samples. A mathematical model which treats homozygotes and heterozygotes discdminately has been developed to measure sample quality and compute the confidence level of using multiple- tube approaches. We use plucked hair samples collected from 26 individual Sichuan snub-nosed monkeys (Rhinopithecus roxel- lana) to test the model. In this case, a confidence level of 99% can be achieved by three positive PCRs. If the sample quality is very poor and requires many PCR replicates, an alternative multiple-step genotyping method is recommended. This model enables researchers to optimize experimental protocols through pilot studies and obtain reliable genetic information using noninvasive sampling method.

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期刊信息
  • 《兽类学报》
  • 中国科技核心期刊
  • 主管单位:中国科协 中国科学院
  • 主办单位:中国科学院西北高原生物研究所 中国动物学会兽类学分会
  • 主编:王德华
  • 地址:青海西宁市新宁路23号
  • 邮编:810001
  • 邮箱:slxb@mail.nwipb.ac.cn
  • 电话:0971-6143617
  • 国际标准刊号:ISSN:1000-1050
  • 国内统一刊号:ISSN:63-1014/Q
  • 邮发代号:56-11
  • 获奖情况:
  • 国家“双效”期刊,1995年获青海省优秀期刊一等奖,1992年获中国科学院优秀期刊三等奖
  • 国内外数据库收录:
  • 俄罗斯文摘杂志,美国化学文摘(网络版),荷兰地学数据库,荷兰文摘与引文数据库,美国生物科学数据库,英国动物学记录,日本日本科学技术振兴机构数据库,中国中国科技核心期刊,中国北大核心期刊(2004版),中国北大核心期刊(2008版),中国北大核心期刊(2011版),中国北大核心期刊(2014版),中国北大核心期刊(2000版)
  • 被引量:5163