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基于微生物来源糖类天然产物生物合成的糖基异构化
  • ISSN号:0513-4870
  • 期刊名称:药学学报
  • 时间:2013.2.12
  • 页码:179-186
  • 分类:Q814.9[生物学—生物工程] Q933[生物学—微生物学]
  • 作者机构:[1]华北理工大学基础医学院,唐山063000, [2]浙江医药高等专科学校,宁波315000, [3]中国医学科学院北京协和医学院医药生物技术研究所/卫生部抗生素生物工程重点实验室,北京100050
  • 相关基金:国家自然科学基金面上项目(No.81172965)、中央级公益性科研院所基本科研业务专项(No.IMBF201509)、浙江省宁波市自然基金项目(No.2015A610287)、协和青年科研基金(No.3332015166)和国家科技重大专项(No.2014ZX09201-003-002和No.2015ZX09102007-016)
  • 相关项目:"高铁霉素"Albomycin生物合成基因功能和铁螯合机制的研究
中文摘要:

为获取全新来源并具有潜在高性能的海因酶,本研究通过对海洋沉积物进行以D-对羟基苯海因作为唯一氮源的选择培养基对潜在菌株进行初步筛选,然后通过双层琼脂法和微孔快速筛选法对初筛菌株进行复筛,并结合分子生物学筛选方法进行终筛,最终得到桔橙小单胞菌(Micromonosporaaurantiaca,GenBank登录号:FJ547135.1)、金色链霉菌(Streptomycesaureofaciens,GenBank登录号:AB326923.1)、桑氏链霉菌(Streptomyces sampsonii,GenBank登录号:GU238264.1)和链霉菌7.145(Streptomycessp.7—145,GenBank登录号:JQ782979.2)4株产D-海因酶的阳性链霉菌。用兼并引物扩增4株阳性菌中的D-海因酶表达序列,转化大肠杆菌(Escherichia coli),并构建表达相应D-海因酶的工程菌株E.coliS1、E.coliS14、E.coli$29和E.coliSl45,提纯4种D-海因酶,并测定酶的酶活和动力学参数。结果显示,链霉菌7.145菌株中表达的海因酶活性最高,比活力为9.7U/mg,催化速度常数Kcat=3.2×10-66/s,Kin=9.5mmol/L。最后利用Swiss—model软件对其进行在线同源模建和CaverAnalyst软件对链霉菌7—145菌株来源的海因酶的催化通道进行结构模拟分析。模拟分析结果显示,本研究中D-海因酶的主要催化通道Tunnel1长度为9.1A,瓶颈氨基酸残基为59位的组氨酸、181位的组氨酸和313位的谷氨酸,瓶颈半径为2.18A;潜在的催化通道Tunnel2长度为13.6A,瓶颈氨基酸为62位的苏氨酸、93位的天冬酰胺和107位的色氨酸,瓶颈半径为1.52A。如果对Tunnel2通道中的62位的苏氨酸、93位的天冬酰胺和107位的色氨酸进行定点突变,有望开发出一种性能更优的D-海因酶。本研究提供了一种全新的海因酶阳性菌筛选体系,通过计算机模拟手段能够更直观了解海因酶的催化机制,为进一步获得性能更优的海因酶奠定基础。

英文摘要:

In order to develop D-hydantoinase with high performance from brand new sources, this research regarded D-phydroxyphenyl hydantion separated primarily from marine Streptomyces library as the only N element to form the medium. Then double agar plate method and rnicroporous rapid screening method were used to do the second screening. At last, the final screening was done with the method of molecular biology. As a result, 4 positive Streptomyces of D-hydantoinase including Micromonospora aurantiaca (GenBank No. FJ547135.1), Streptomyces aureofaciens (GenBank No. AB326923.1), Streptomyces sampsonii (GenBank No. GU238264.1) and Streptomyces sp. 7- 145 (GenBank No. JQ782979.2) were obtained. Then the expression engineered strains of E.coli S1, E.coli S14 E.coli $29 and E.coli S145, by transforming Escherichia coli, secreting D-hydantoinase were built through degenerating primer and extending D-hydantoinases from the 4 positive bacterium. The 4 D-hydantoinases were purified, meanwhile the enzyme activity and kinetic parameters were also tested. The result showed that the enzyme from Streptomyces sp. 7-145 was the most active and its enzymatic compare energy was 9.7 U/mg, with Kcat~-3.2x 10-6/s and Km =9.5 mmol/L. Finally, the homology modeling online by Swiss-model and the simulation analysis of structure to the catalytic channel of D-hydantoinase through Caver Analyst were performed. According to simulation analysis, the length of the main catalytic channel, Tunnel_l, of D-hydantoinase was 9.1 /~. The amino acids residue of bottleneck were histidines of 59th and 181st sites, and glutamic acid of 313rd site, and neck radius was 2.18 ~. However, the length of the potential catalytic channel, Tunnel_2, was 13.6/~ long. The amino acids residue of bottleneck were the threonine of 62nd site, asparagine of 93rd site and tryptophan of 107th site, and neck radius was 1.52 A. Conducting site-directed mutagenesis to the threonine of 62nd site, asparagine of 93rd site and tryptophan of 107th site, might be more

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期刊信息
  • 《药学学报》
  • 北大核心期刊(2011版)
  • 主管单位:中国科学技术协会
  • 主办单位:中国药学会 中国药学科学院药物研究所
  • 主编:王晓良
  • 地址:北京市先农坛街1号
  • 邮编:100050
  • 邮箱:yxxb@imm.ac.cn
  • 电话:010-63026192
  • 国际标准刊号:ISSN:0513-4870
  • 国内统一刊号:ISSN:11-2163/R
  • 邮发代号:2-233
  • 获奖情况:
  • 国家期刊奖,国家“双高”期刊,2002年为第2届国家期刊奖百种重点科技期刊并获第3...
  • 国内外数据库收录:
  • 俄罗斯文摘杂志,美国国际药学文摘,美国化学文摘(网络版),英国农业与生物科学研究中心文摘,波兰哥白尼索引,荷兰文摘与引文数据库,荷兰医学文摘,美国生物医学检索系统,美国生物科学数据库,日本日本科学技术振兴机构数据库,中国中国科技核心期刊,中国北大核心期刊(2004版),中国北大核心期刊(2008版),中国北大核心期刊(2011版),中国北大核心期刊(2014版),英国英国皇家化学学会文摘,瑞典开放获取期刊指南,中国北大核心期刊(2000版)
  • 被引量:37721