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堆积的胸腺嘧啶体系光物理失活的动力学模拟
  • ISSN号:1000-6818
  • 期刊名称:《物理化学学报》
  • 时间:0
  • 分类:O641[理学—物理化学;理学—化学] O644[理学—物理化学;理学—化学]
  • 作者机构:[1]重庆邮电大学高性能计算与应用研究所,重庆400065
  • 相关基金:国家自然科学基金(21073242); 重庆市自然科学基金(cstc2011jjA00009); 重庆市教委科学技术项目(KJ100507)资助
中文摘要:

采用半经典动力学方法模拟了π堆积的胸腺嘧啶体系最低激发态的光物理失活过程.设置激光脉冲仅作用于一个胸腺嘧啶分子T,另一胸腺嘧啶分子T'保持基态.模拟发现由于T与T'之间存在π堆积相互作用,导致电荷转移,形成T带负电荷、T'带正电符的激基复合物.由于相邻分子的空间效应阻碍了激发的T分子到达圆锥相交所必需的强烈扭曲,激基复合物的寿命比单体增长.当分子间距离缩短至0.3 nm后,T分子C_5—C_6键扭曲程度最大,此时发生电荷重组,两个胸腺嘧啶分子均恢复电中性.电荷重组诱导T'分子发生畸变,并在C_5'—C_6'扭曲最大时避免相交,体系衰减至基态,T和T'分子均恢复平面构型.

英文摘要:

A semiclassical dynamics simulation study was undertaken to determine the photophysical deactivation of the lowest excited state of two stacked thymines.Only one thymine,referred to as T,was excited by a laser pulse and the other molecule,referred to as T,remained in the ground state.The simulation results show that charge transfer between the two thymines because of a rr-stacking interaction leads to the formation of an excimer state,which includes a negative T and a positive T.Additionally,the simulation study indicates that a steric effect of the neighboring bases inhibits the out-of-plane deformation, which is essential in accessing the conical intersection between the lowest electronic-excited state and the ground state.The steric effect eventually leads to a longer electronic-excited state lifetime for the two stacked thymines.The simulation results reveal that when the interbase distance is less than 0.3 nm the molecule T has a remarkable deformation at its C_5 and C_6 sites resulting in charge recombination.The charge recombination ultimately makes the system electronically neutral.On the other hand,the molecule T' has a strong twist about its C_5'—C_6' bond in the proximity of the avoided crossing by which the system decays to the ground state.Finally,the two thymine molecules in their ground states recover their planar geometries.

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期刊信息
  • 《物理化学学报》
  • 中国科技核心期刊
  • 主管单位:中国科学技术协会
  • 主办单位:北京大学化学与分子工程学院承办
  • 主编:刘忠范
  • 地址:北京大学化学楼
  • 邮编:100871
  • 邮箱:whxb@pku.edu.cn
  • 电话:010-62751724
  • 国际标准刊号:ISSN:1000-6818
  • 国内统一刊号:ISSN:11-1892/O6
  • 邮发代号:82-163
  • 获奖情况:
  • 中文核心期刊
  • 国内外数据库收录:
  • 俄罗斯文摘杂志,美国化学文摘(网络版),荷兰文摘与引文数据库,美国科学引文索引(扩展库),英国科学文摘数据库,日本日本科学技术振兴机构数据库,中国中国科技核心期刊,中国北大核心期刊(2004版),中国北大核心期刊(2008版),中国北大核心期刊(2011版),中国北大核心期刊(2014版),英国英国皇家化学学会文摘,中国北大核心期刊(2000版)
  • 被引量:24781