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鲢鱼肠道细菌的分离鉴定及药敏试验
  • 期刊名称:江西农业学报. 2011,23(3):147-149
  • 时间:0
  • 分类:Q78[生物学—分子生物学] O342[理学—固体力学;理学—力学]
  • 作者机构:[1]School of Life Sciences, Jiangsu Normal University, Xuzhou 221116, China
  • 相关基金:Supported by the National Natural Science Foundation of China (No.31272692,No.30800847)
  • 相关项目:嗜水气单胞菌诱导斑马鱼皮肤免疫应答的分子机制
中文摘要:

[Objective]Staphylococcus arthritis became an increasingly significant health problem in intensive chicken farming in China.[Method]In this study,a bacteria strain was isolated from the broiler chicken suffering from arthritis and named as the strain Gg1.[Result]It was then identified as Staphylococcus chromogenes by the biochemical tests and phylogenetic tree analysis based on 16S rDNA sequence.Furthermore,the catalase(katA)gene was amplified by PCR using the designed primers,and the expected fragment was 1 232 bp long encoding a protein of 410 amino acids that shares the conserved motifs including catalase,heme-binding ligand and active center motif.Six phosphorylation sites(Ser95,Thr96,Ser241,Ser242,Thr281,Ser338),four conserved residues(Ser95,His216,Tyr281,Asp341)and two active sites(His56,Asn129)were demonstrated by multiple sequence alignment and homology comparisons.The homology modeling of 3D structure of katA protein was done by SWISSMODEL server based on the template retrieved from the catalase(PDB:2ISA_A)of Vibrio salmonicida.The katA protein represents a four-domain globular protein,the quality and reliability of the resulting protein structure was further verified by Ramachandran plot.[Conclusion]To our knowledge,this is the first report of S.chromogenes linked to arthritis in chicken and the bioinformatic characterization of its katA gene.

英文摘要:

[Objective]Staphylococcus arthritis became an increasingly significant health problem in intensive chicken farming in China.[Method]In this study,a bacteria strain was isolated from the broiler chicken suffering from arthritis and named as the strain Gg1.[Result]It was then identified as Staphylococcus chromogenes by the biochemical tests and phylogenetic tree analysis based on 16S rDNA sequence.Furthermore,the catalase(katA)gene was amplified by PCR using the designed primers,and the expected fragment was 1 232 bp long encoding a protein of 410 amino acids that shares the conserved motifs including catalase,heme-binding ligand and active center motif.Six phosphorylation sites(Ser95,Thr96,Ser241,Ser242,Thr281,Ser338),four conserved residues(Ser95,His216,Tyr281,Asp341)and two active sites(His56,Asn129)were demonstrated by multiple sequence alignment and homology comparisons.The homology modeling of 3D structure of katA protein was done by SWISSMODEL server based on the template retrieved from the catalase(PDB:2ISA_A)of Vibrio salmonicida.The katA protein represents a four-domain globular protein,the quality and reliability of the resulting protein structure was further verified by Ramachandran plot.[Conclusion]To our knowledge,this is the first report of S.chromogenes linked to arthritis in chicken and the bioinformatic characterization of its katA gene.

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